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AT3G06770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: response to cyclopentenone, carbohydrate metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G49215.1); Has 3178 Blast hits to 3170 proteins in 427 species: Archae - 6; Bacteria - 1287; Metazoa - 7; Fungi - 621; Plants - 1165; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Protein Annotations
CAZy:GH28eggNOG:COG5434eggNOG:ENOG410IFY9EMBL:AC023912EMBL:CP002686EnsemblPlants:AT3G06770EnsemblPlants:AT3G06770.1
EnsemblPlants:AT3G06770.3entrez:819862ExpressionAtlas:Q9M7Y3Gene3D:2.160.20.10GeneID:819862GO:GO:0004650GO:GO:0005576
GO:GO:0005975GO:GO:0071555Gramene:AT3G06770.1Gramene:AT3G06770.3hmmpanther:PTHR31339hmmpanther:PTHR31339:SF15InterPro:IPR000743
InterPro:IPR006626InterPro:IPR011050InterPro:IPR012334KEGG:ath:AT3G06770Pfam:PF00295PhylomeDB:Q9M7Y3Proteomes:UP000006548
RefSeq:NP_566292.1RefSeq:NP_850526.1SMART:SM00710SMR:Q9M7Y3STRING:3702.AT3G06770.2SUPFAM:SSF51126TAIR:AT3G06770
UniGene:At.26688UniProt:Q9M7Y3
Coordinates (TAIR10) chr3:-:2135119..2136616
Molecular Weight (calculated) 40810.00 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.08
Length 377 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFADKGGAQ LYVPPGHWLT GSFSLTSHLT LFLENGAVIV ASQDPSHWEV VDPLPSYGRG IDLPGKRYKS LINGNKLHDV VVTGDNGTID GQGLVWWDRF
101: TSHSLKYNRP HLIEFLSSEN VIVSNLTFLN APAYSIYSIY SSHVYIHKIL AHSSPKSPYT IGIVPDSSDY VCIQNSTINV GYDAISLKSG WDEYGIAYSR
201: PTENVHIRNV YLRGASGSSI SFGSEMSGGI SDVVVDNAHI HYSLTGIAFR TTKGRGGYIK EIDISNIDML RIGTAIVANG SFGSHPDDKY DVNALPLVSH
301: IRLSNISGEN IGIAGKLFGI KESPFSSVTL SNVSLSMSSG SSVSWQCSYV YGSSESVIPE PCPELKRDAD AYGRAAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)