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AT3G06750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; Has 6317 Blast hits to 3436 proteins in 319 species: Archae - 0; Bacteria - 429; Metazoa - 2195; Fungi - 739; Plants - 2175; Viruses - 83; Other Eukaryotes - 696 (source: NCBI BLink).
Protein Annotations
EMBL:AC023912EMBL:AY039948EMBL:AY113863EMBL:CP002686EnsemblPlants:AT3G06750EnsemblPlants:AT3G06750.1entrez:819860
GeneID:819860GO:GO:0031225Gramene:AT3G06750.1hmmpanther:PTHR35487hmmpanther:PTHR35487:SF1KEGG:ath:AT3G06750OMA:YYHTPPQ
Proteomes:UP000006548RefSeq:NP_566291.1TAIR:AT3G06750UniGene:At.18840UniProt:Q9M7Y1
Coordinates (TAIR10) chr3:-:2129765..2130208
Molecular Weight (calculated) 15637.50 Da
IEP (calculated) 5.61
GRAVY (calculated) -0.14
Length 147 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAIRFSNLS GLLILLMSLP LLVTSKDETV SCTMCSSCDN PCNPVPSSYS PPPPPPSSSG GGGSYYYSPP PPSSSGGVKY PPPYGGDGYG GYYPPPYYGN
101: YGTPPPPNPI VPYFPFYYHT PPQGYSGSAR LQNSLLFALF AVLLCFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)