AT3G06660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PAPA-1-like family protein / zinc finger (HIT type) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PAPA-1-like family protein / zinc finger (HIT type) family protein; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529), PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: HIT zinc finger ;PAPA-1-like conserved region (TAIR:AT2G47350.1); Has 668 Blast hits to 539 proteins in 161 species: Archae - 0; Bacteria - 83; Metazoa - 198; Fungi - 84; Plants - 88; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2103060..2104776 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46924.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.36 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.92 | ||||||||||||||||||||||||||||||||
| Length | 427 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDSGGSAST LAGFTGRRRR SALPRRPRDI KGSLHSFKFL PPSTQTNTAL SNEANPSFRN TNSLCGSVSE NKLKVKLKLG AGVTRTLQTN SEAGTYTKAL 101: DNGQKPFQSK VKGNGHVQKT LFLGDIHQSR GYPSKTENGA SMSEKSKRGL KKRVLDPEPD SDDGDEEIRY LVKLKSKRVG VSHEGKESEG GRRIHSSGHD 201: MEDGKHLSSD KLAVSGRKKP VMGMVDPLPA GETSGQIPTT RTRALQSGKD PHSVIRSSSL EFPDGLPCPS SKRPKQKLSE VEQQSKKAEA AQRRRMQCEK 301: AAQEAEAEAI RKILGQDSGR KKREEKIKKQ QEERAQERAA RSSTLASNTI RLVIGPSGTT MTFSEDIGLP DIFKPVTYSY PPPREKCVGP NCEKAYKYRD 401: SKSKLPLCSL GCYNAIQEKM EQALIHC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)