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AT3G06660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PAPA-1-like family protein / zinc finger (HIT type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PAPA-1-like family protein / zinc finger (HIT type) family protein; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529), PAPA-1-like conserved region (InterPro:IPR006880); BEST Arabidopsis thaliana protein match is: HIT zinc finger ;PAPA-1-like conserved region (TAIR:AT2G47350.1); Has 668 Blast hits to 539 proteins in 161 species: Archae - 0; Bacteria - 83; Metazoa - 198; Fungi - 84; Plants - 88; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWIXeggNOG:ENOG41104W0EMBL:AY034922EMBL:AY117257EMBL:CP002686EnsemblPlants:AT3G06660EnsemblPlants:AT3G06660.1
entrez:819851GeneID:819851GO:GO:0006338GO:GO:0006355GO:GO:0031011Gramene:AT3G06660.1hmmpanther:PTHR21561
hmmpanther:PTHR21561:SF12InterPro:IPR006880InterPro:IPR007529InterPro:IPR029523KEGG:ath:AT3G06660ncoils:CoilOMA:EQALIHC
PANTHER:PTHR21561Pfam:PF04438Pfam:PF04795PhylomeDB:Q94CE6Proteomes:UP000006548RefSeq:NP_566289.1SMART:SM01406
STRING:3702.AT3G06660.1TAIR:AT3G06660UniGene:At.17414UniProt:Q94CE6
Coordinates (TAIR10) chr3:+:2103060..2104776
Molecular Weight (calculated) 46924.70 Da
IEP (calculated) 10.36
GRAVY (calculated) -0.92
Length 427 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDSGGSAST LAGFTGRRRR SALPRRPRDI KGSLHSFKFL PPSTQTNTAL SNEANPSFRN TNSLCGSVSE NKLKVKLKLG AGVTRTLQTN SEAGTYTKAL
101: DNGQKPFQSK VKGNGHVQKT LFLGDIHQSR GYPSKTENGA SMSEKSKRGL KKRVLDPEPD SDDGDEEIRY LVKLKSKRVG VSHEGKESEG GRRIHSSGHD
201: MEDGKHLSSD KLAVSGRKKP VMGMVDPLPA GETSGQIPTT RTRALQSGKD PHSVIRSSSL EFPDGLPCPS SKRPKQKLSE VEQQSKKAEA AQRRRMQCEK
301: AAQEAEAEAI RKILGQDSGR KKREEKIKKQ QEERAQERAA RSSTLASNTI RLVIGPSGTT MTFSEDIGLP DIFKPVTYSY PPPREKCVGP NCEKAYKYRD
401: SKSKLPLCSL GCYNAIQEKM EQALIHC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)