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AT3G06650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP-citrate lyase B-1
Curator
Summary (TAIR10)
One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase
Computational
Description (TAIR10)
ATP-citrate lyase B-1 (ACLB-1); FUNCTIONS IN: ATP citrate synthase activity; INVOLVED IN: acetyl-CoA biosynthetic process; LOCATED IN: citrate lyase complex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA synthetase, beta subunit, conserved site (InterPro:IPR017866), Citrate synthase-like, small alpha subdomain (InterPro:IPR016143), Succinyl-CoA ligase, alpha subunit (InterPro:IPR005810), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), NAD(P)-binding domain (InterPro:IPR016040), CoA-binding (InterPro:IPR003781), Citrate synthase-like, core (InterPro:IPR016141), ATP-citrate lyase/succinyl-CoA ligase, active site (InterPro:IPR017440), Citrate synthase-like (InterPro:IPR002020), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP citrate lyase subunit B 2 (TAIR:AT5G49460.1); Has 8069 Blast hits to 8065 proteins in 2074 species: Archae - 271; Bacteria - 4029; Metazoa - 557; Fungi - 289; Plants - 162; Viruses - 0; Other Eukaryotes - 2761 (source: NCBI BLink).
Protein Annotations
BioGrid:5180EC:2.3.3.8eggNOG:COG0074eggNOG:COG0372eggNOG:ENOG410ISBEeggNOG:ENOG410JW3SEMBL:AC020580
EMBL:AC036106EMBL:BT002736EMBL:CP002686EnsemblPlants:AT3G06650EnsemblPlants:AT3G06650.1entrez:819845Gene3D:1.10.230.10
Gene3D:1.10.580.10Gene3D:3.40.50.261Gene3D:3.40.50.720GeneID:819845Genevisible:Q9C522GO:GO:0003878GO:GO:0005524
GO:GO:0005829GO:GO:0006085GO:GO:0006629GO:GO:0009346GO:GO:0016020GO:GO:0046872GO:GO:0048037
Gramene:AT3G06650.1gramene_pathway:2.3.3.8gramene_pathway:PWY-5172hmmpanther:PTHR23118hmmpanther:PTHR23118:SF6HOGENOM:HOG000151479InParanoid:Q9C522
InterPro:IPR002020InterPro:IPR003781InterPro:IPR005810InterPro:IPR005811InterPro:IPR016040InterPro:IPR016102InterPro:IPR016142
InterPro:IPR016143InterPro:IPR017440InterPro:IPR017866iPTMnet:Q9C522KEGG:00020+6.2.1.5KEGG:00640+6.2.1.5KEGG:00660+6.2.1.5
KEGG:00720+6.2.1.5KEGG:ath:AT3G06650KO:K01648OMA:RFIEICTPaxDb:Q9C522Pfam:PF00285Pfam:PF00549
Pfam:PF02629Pfam:Q9C522PhylomeDB:Q9C522PRIDE:Q9C522PRINTS:PR01798PRO:PR:Q9C522PROSITE:PS00399
PROSITE:PS01216PROSITE:PS01217ProteinModelPortal:Q9C522Proteomes:UP000006548Reactome:R-ATH-163765Reactome:R-ATH-75105RefSeq:NP_187317.1
scanprosite:PS00399scanprosite:PS01216scanprosite:PS01217SMR:Q9C522STRING:3702.AT3G06650.1SUPFAM:SSF48256SUPFAM:SSF51735
TAIR:AT3G06650tair10-symbols:ACLB-1UniGene:At.17419UniGene:At.67311unipathway:UPA00223UniProt:Q9C522
Coordinates (TAIR10) chr3:-:2079247..2082633
Molecular Weight (calculated) 65817.50 Da
IEP (calculated) 7.91
GRAVY (calculated) -0.01
Length 608 amino acids
Sequence (TAIR10)
(BLAST)
001: MATGQLFSRN TQALFYNYKQ LPIQRMLDFD FLCGRETPSV AGIINPGSEG FQKLFFGQEE IAIPVHAAIE AACAAHPTAD VFINFASFRS AAASSMAALK
101: QPTIKVVAII AEGVPESDTK QLIAYARANN KVIIGPATVG GVQAGAFKIG DTAGTIDNII QCKLYRPGSV GFVSKSGGMS NEMYNTIARV TDGIYEGIAI
201: GGDVFPGSTL SDHILRFNNI PQIKMVVVLG ELGGRDEYSL VEAMKQGKVT KPVVAWVSGT CARLFKSEVQ FGHAGAKSGG EMESAQAKNQ ALQDAGATVP
301: TSFEALEVAI KETFDKLVEE GKVSPIKEVT PPQIPEDLSS AIKSGKVRAP THIISTISDD RGEEPCYAGV PMSSIIEQGY GVGDVISLLW FKRSLPRYCT
401: KFIEICIMLC ADHGPCVSGA HNTIVTARAG KDLVSSLVSG LLTIGPRFGG AIDDAARYFK DACDRNLTPY EFVEGMKKKG IRVPGIGHRI KSRDNRDKRV
501: ELLQKFARSN FPAVKYMEYA VQVETYTLSK ANNLVLNVDG AIGSLFLDLL AGSGMFTKQE IDEIVQIGYL NGLFVLARSI GLIGHTFDQK RLKQPLYRHP
601: WEDVLYTK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)