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AT3G06610.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DNA-binding enhancer protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-binding enhancer protein-related; Has 198 Blast hits to 198 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 17; Plants - 36; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111M4GeggNOG:KOG3450EMBL:AC020580EMBL:AY072362
EMBL:AY088257EMBL:AY114729EMBL:CP002686EnsemblPlants:AT3G06610
EnsemblPlants:AT3G06610.1entrez:819840GeneID:819840GO:GO:0003677
GO:GO:0005829Gramene:AT3G06610.1hmmpanther:PTHR31184hmmpanther:PTHR31184:SF3
HOGENOM:HOG000189569IntAct:Q9C901KEGG:ath:AT3G06610ncoils:Coil
OMA:AKHDSGAPhylomeDB:Q9C901PRO:PR:Q9C901Proteomes:UP000006548
RefSeq:NP_566288.1SMR:Q9C901STRING:3702.AT3G06610.1TAIR:AT3G06610
UniGene:At.43721UniProt:Q9C901
Coordinates (TAIR10) chr3:+:2060837..2061845
Molecular Weight (calculated) 12796.00 Da
IEP (calculated) 4.71
GRAVY (calculated) -0.63
Length 115 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGAEEAGAE IAVDSKDLQQ QSKAFDKLTD RVEDRQLDSS RVQSAMASIA ASREADLNAK RLREKELASV KINPADVEFI VNELEIEKNV AERTLREHKG
101: DAVAATRQLL SRYPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)