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AT3G06590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT3G17100.2); Has 284 Blast hits to 282 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1F4eggNOG:ENOG410YRF4EMBL:AB493605EnsemblPlants:AT3G06590EnsemblPlants:AT3G06590.1EnsemblPlants:AT3G06590.2entrez:819838
ExpressionAtlas:C0SVA2Gene3D:4.10.280.10GeneID:819838Gramene:AT3G06590.1Gramene:AT3G06590.2hmmpanther:PTHR33124hmmpanther:PTHR33124:SF12
InterPro:IPR011598KEGG:ath:AT3G06590ncoils:CoilOMA:AMNSLVQPaxDb:C0SVA2Pfam:Q9C8Z9Pfscan:PS50888
PhylomeDB:C0SVA2PRIDE:C0SVA2PROSITE:PS50888ProteinModelPortal:C0SVA2RefSeq:NP_566287.1RefSeq:NP_974239.1STRING:3702.AT3G06590.1
SUPFAM:SSF47459TAIR:AT3G06590UniGene:At.25233UniProt:C0SVA2UniProt:Q9C8Z9
Coordinates (TAIR10) chr3:-:2054647..2055312
Molecular Weight (calculated) 24257.40 Da
IEP (calculated) 12.34
GRAVY (calculated) -0.43
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLISDIEP PTSTTSDLVR RKKRSSASSA ASSRSSASSV SGEIHARWRS EKQQRIYSAK LFQALQQVRL NSSASTSSSP TAQKRGKAVR EAADRALAVS
101: ARGRTLWSRA ILANRIKLKF RKQRRPRATM AIPAMTTVVS SSSNRSRKRR VSVLRLNKKS IPDVNRKVRV LGRLVPGCGK QSVPVILEEA TDYIQALEMQ
201: VRAMNSLVQL LSSYGSAPPP I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)