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AT3G06510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18466306 (2008): plastid plastid envelope plastid outer membrane
  • PMID:24872594 (2014): plastid plastid envelope plastid outer membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): plastid
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid envelope
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase superfamily protein
Curator
Summary (TAIR10)
Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezing
Computational
Description (TAIR10)
SENSITIVE TO FREEZING 2 (SFR2); FUNCTIONS IN: beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to freezing; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 27 (TAIR:AT3G60120.1); Has 11582 Blast hits to 10595 proteins in 1458 species: Archae - 144; Bacteria - 8179; Metazoa - 842; Fungi - 193; Plants - 1310; Viruses - 0; Other Eukaryotes - 914 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G06510-MONOMERBioCyc:ARA:GQT-1601-MONOMERCAZy:GH1EC:2.4.1.184EMBL:AC020580EMBL:AF219380EMBL:AF419582
EMBL:AJ491320EMBL:AJ491321EMBL:AJ491322EMBL:AY059889EMBL:AY087713EMBL:BT002100EMBL:CP002686
EnsemblPlants:AT3G06510EnsemblPlants:AT3G06510.1entrez:819829Gene3D:3.20.20.80GeneID:819829Genevisible:Q93Y07GO:GO:0005975
GO:GO:0008378GO:GO:0008422GO:GO:0009409GO:GO:0009507GO:GO:0009536GO:GO:0009707GO:GO:0009941
GO:GO:0016021GO:GO:0046480GO:GO:0050826GO:GO:0080079hmmpanther:PTHR10353hmmpanther:PTHR10353:SF33InParanoid:Q93Y07
InterPro:IPR001360InterPro:IPR013781InterPro:IPR017853InterPro:IPR018120KEGG:ath:AT3G06510OMA:FPYIDSIPANTHER:PTHR10353
Pfam:PF00232Pfam:Q93Y07PhylomeDB:Q93Y07PRIDE:Q93Y07PRINTS:PR00131PRO:PR:Q93Y07PROSITE:PS00572
ProteinModelPortal:Q93Y07Proteomes:UP000006548Reactome:R-ATH-189085RefSeq:NP_001118591.1RefSeq:NP_566285.1scanprosite:PS00572SMR:Q93Y07
SUPFAM:SSF51445SwissLipids:SLP:000001450TAIR:AT3G06510tair10-symbols:ATSFR2tair10-symbols:SFR2TMHMM:TMhelixUniGene:At.11886
UniProt:Q93Y07
Coordinates (TAIR10) chr3:+:2016450..2019533
Molecular Weight (calculated) 70782.30 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.26
Length 622 amino acids
Sequence (TAIR10)
(BLAST)
001: MELFALLIKV AGLLATVTVG ANVVSYSRFR RQNLAKFRSP IDESKEVLAD FNSIEHEEGK FFFGLATAPA HAEDDLDDAW LQFAKETPCS AEEAEAADKK
101: ARRKKVKLAV GAITKGLAKN THGKEDKNAA DKPPSKNVAA WHNAPHAEDR LKFWSDPDKE VKLAKDTGVT VFRMGVDWSR IMPVEPTKGI KEAVNYEAVE
201: HYKWILKKVR SNGMKVMLTL FHHSLPPWAA DYGGWKMEKT VDYFMDFTRI VVDSMYDLVD SWVTFNEPHI FTMLTYMCGS WPGNNPDFLE IATSTLPMGV
301: FHRALHWMAV AHSKAYDYIH GKISLKKPLV GVAHHVSFMR PYGLFDIGAV TISNSLTIFP YIDSICEKLD FIGINYYGQE AVCGAGLKLV ETDEYSESGR
401: GVYPDGLYRV LLMFHERYKH LKVPFIVTEN GVSDETDVIR RPYLIEHLLA LYAAMLKGVP VLGYIFWTIS DNWEWADGYG PKFGLVAVDR SHDLARTLRQ
501: SYHLFSKIVK SGKVTRKDRS LAWNELQKAA KAGKLRPFYR GVDNHNLMYA DGLDKPQWRP FVDRDWRFGH YQMDGLQDPL SRVARTLLIW PLIMKKRIRK
601: VKIKHTDDAG LVLHPALASP FD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)