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AT3G06480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEAD box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEAD box RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase 1 (TAIR:AT3G01540.4); Has 132761 Blast hits to 82344 proteins in 3707 species: Archae - 865; Bacteria - 47475; Metazoa - 37917; Fungi - 12444; Plants - 11781; Viruses - 886; Other Eukaryotes - 21393 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-70-MONOMEREC:3.6.4.13eggNOG:COG0513eggNOG:KOG0331EMBL:AC011623EMBL:CP002686EnsemblPlants:AT3G06480
EnsemblPlants:AT3G06480.1entrez:819825Gene3D:3.40.50.300GeneID:819825Genevisible:Q9SQV1GO:GO:0000184GO:GO:0003723
GO:GO:0004386GO:GO:0005524GO:GO:0005634GO:GO:0005773GO:GO:0006364Gramene:AT3G06480.1hmmpanther:PTHR24031
hmmpanther:PTHR24031:SF255HOGENOM:HOG000154116InParanoid:Q9SQV1InterPro:IPR000629InterPro:IPR001202InterPro:IPR001650InterPro:IPR011545
InterPro:IPR014001InterPro:IPR014014InterPro:IPR027417iPTMnet:Q9SQV1KEGG:ath:AT3G06480KO:K12823OMA:PGEANNM
PaxDb:Q9SQV1Pfam:PF00270Pfam:PF00271Pfam:PF00397Pfam:Q9SQV1Pfscan:PS50020Pfscan:PS51192
Pfscan:PS51194Pfscan:PS51195PhylomeDB:Q9SQV1PRIDE:Q9SQV1PRO:PR:Q9SQV1PROSITE:PS00039PROSITE:PS01159
PROSITE:PS50020PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q9SQV1Proteomes:UP000006548RefSeq:NP_187299.1
scanprosite:PS00039scanprosite:PS01159SMART:SM00456SMART:SM00487SMART:SM00490SMR:Q9SQV1STRING:3702.AT3G06480.1
SUPFAM:SSF51045SUPFAM:SSF52540TAIR:AT3G06480UniGene:At.27592UniProt:Q9SQV1
Coordinates (TAIR10) chr3:-:1985697..1989666
Molecular Weight (calculated) 119564.00 Da
IEP (calculated) 10.40
GRAVY (calculated) -0.79
Length 1088 amino acids
Sequence (TAIR10)
(BLAST)
0001: MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)