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AT3G06450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HCO3- transporter family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HCO3- transporter family; FUNCTIONS IN: anion exchanger activity; INVOLVED IN: anion transport; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT3G62270.1); Has 2674 Blast hits to 1402 proteins in 195 species: Archae - 0; Bacteria - 4; Metazoa - 2029; Fungi - 304; Plants - 228; Viruses - 2; Other Eukaryotes - 107 (source: NCBI BLink).
Protein Annotations
BioGrid:5156eggNOG:ENOG410XPHDeggNOG:KOG1172EMBL:AC011623
EMBL:AY058850EMBL:BT000635EMBL:CP002686EnsemblPlants:AT3G06450
EnsemblPlants:AT3G06450.1EnsemblPlants:AT3G06450.2entrez:819821GeneID:819821
Genevisible:Q93Z13GO:GO:0005452GO:GO:0005886GO:GO:0016021
Gramene:AT3G06450.1Gramene:AT3G06450.2hmmpanther:PTHR11453hmmpanther:PTHR11453:SF44
HOGENOM:HOG000015213InParanoid:Q93Z13InterPro:IPR003020InterPro:IPR011531
iPTMnet:Q93Z13KEGG:ath:AT3G06450MINT:MINT-8069342OMA:QFWERIV
PANTHER:PTHR11453PaxDb:Q93Z13Pfam:PF00955Pfam:Q93Z13
PhylomeDB:Q93Z13PRIDE:Q93Z13PRO:PR:Q93Z13ProteinModelPortal:Q93Z13
Proteomes:UP000006548Reactome:R-ATH-1237044Reactome:R-ATH-1247673Reactome:R-ATH-425381
RefSeq:NP_001118590.1RefSeq:NP_187296.2STRING:3702.AT3G06450.1TAIR:AT3G06450
TCDB:2.A.31.3.3TMHMM:TMhelixUniGene:At.18604UniProt:Q93Z13
Coordinates (TAIR10) chr3:-:1976085..1979303
Molecular Weight (calculated) 80772.70 Da
IEP (calculated) 8.83
GRAVY (calculated) 0.22
Length 732 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEAESFVPF QGIKKDVKGR LNCYKQDWIS GLRAGFRILA PTTYIFFASA IPVITFGEQL ERDTDGKITA VQTLVSTALC GVIHSIIGGQ PLLILGVAEP
101: TVIMYTFMFN FAKSRTDLGS NLFLAWTGWV CLWTGLLLFL LAVLGACTFI NRFTRLAGEL FGILIAMLFM QEAIRGIVDE FGVPGRTNPR SAEFQPAWVF
201: ANGMFGLVLS SGLLYTGLKS RKARSWRFGA EWLRGFIADY GVPVMVVVWT CISYIPWKSV PQGIPRRLVS PNPWSPGAYQ NWTVIKEMVD VPVLYILLAV
301: VPASMIAVLY YFDHSVASQL AQQEDFNLRK PPAYHYDLFL LGFLTILCGL IGIPPSNGVI PQSPMHTKSL ATLNHQLLRN KLVAAARKCI RNNATIGEVY
401: GSMEEAYQQM QSPLIHQEPS RIQGLKQSHI QKASNADALV DETVFDIETE VENILPVEVK EQRVSNFLQA MMVAGCVAAM PLIKRIPSSV LWGYFAYMAI
501: ESLPGNQFWE RIVLLFTAPS RRFKVLEDNH AVFIETVPFK TMAMFTLFQT AYLLVCFGIT WVPVAGVLFP LMIMFLVPVR QYVLPNFFKG AHLQDLDAAE
601: YEEAPAILSF NLKPEGEVSR ATSFADSGEV MDGMFTRSRG EIRKVSSLKL GGGGSGSTVG SPAGGGVELM RRVVSFQNPR VSEKVYIRSL SDFRGGGEIS
701: PRSSAGRAPF SPRSATGGGG GEQRLSNLGK SV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)