AT3G06410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 3128 Blast hits to 1576 proteins in 227 species: Archae - 0; Bacteria - 85; Metazoa - 789; Fungi - 248; Plants - 1012; Viruses - 7; Other Eukaryotes - 987 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1947471..1949528 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48854.30 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.05 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||||||
| Length | 462 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERYGRPGEE GSRSDPSLEW TSHGGETAVE APMWRLGLSG GGGGGGGGES YPERPDEPDC IYYLRTGVCG YGSRCRFNHP RDRGAVIGGV RGEAGALPER 101: MGHPVCQHFM RTGTCKFGAS CKYHHPRQGG GGGSVAPVSL SYLGYPLRPG EKECSYYLRT GQCKFGLTCR FNHPVPLAVQ GPPQQPQQQQ PQPQPQLQTI 201: YPTLQSQSIP SSQQYGLVLT RPSFLTGSYL QSPYGPPMVL PPGMVPYSGW NPYQASLSAM PSPGTQPSIG SSSIYGLTPL SPSATAYTGT YQSVPSSNST 301: SKEFPQRPDQ PECQYFMRTG DCKFGSSCRY HHPVDAVPPK TGIVLSSIGL PLRPGVAQCT HFAQHGICKF GPACKFDHSM SSSLSYSPSA SSLTDMPVAP 401: YPIGSSSLSG SSAPVSSSNE PTKEAVTPAV SSMVSGLSRP EPAETSGDSA SVSGSIEAKT SS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)