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AT3G06400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chromatin-remodeling protein 11
Curator
Summary (TAIR10)
Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature.
Computational
Description (TAIR10)
chromatin-remodeling protein 11 (CHR11); FUNCTIONS IN: in 7 functions; INVOLVED IN: cell growth, embryo sac development; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), SLIDE (InterPro:IPR015195), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 27406 Blast hits to 21426 proteins in 2299 species: Archae - 146; Bacteria - 6219; Metazoa - 6758; Fungi - 5167; Plants - 1971; Viruses - 469; Other Eukaryotes - 6676 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2245-MONOMERBioCyc:ARA:GQT-411-MONOMERBioCyc:ARA:GQT-412-MONOMERBioGrid:5149EC:3.6.4.-eggNOG:COG0553eggNOG:KOG0385
EMBL:AC011623EMBL:AY091030EMBL:CP002686EnsemblPlants:AT3G06400EnsemblPlants:AT3G06400.1EnsemblPlants:AT3G06400.2entrez:819814
ExpressionAtlas:Q8RWY3Gene3D:1.10.10.60Gene3D:3.40.50.300GeneID:819814Genevisible:Q8RWY3GO:GO:0003677GO:GO:0004386
GO:GO:0005524GO:GO:0009908GO:GO:0016589GO:GO:0016887GO:GO:0043044hmmpanther:PTHR10799hmmpanther:PTHR10799:SF691
HOGENOM:HOG000192862InParanoid:Q8RWY3InterPro:IPR000330InterPro:IPR001005InterPro:IPR001650InterPro:IPR009057InterPro:IPR014001
InterPro:IPR015194InterPro:IPR015195InterPro:IPR017884InterPro:IPR027417InterPro:IPR029915iPTMnet:Q8RWY3MINT:MINT-8064775
ncoils:CoilPANTHER:PTHR10799:SF691PaxDb:Q8RWY3Pfam:PF00176Pfam:PF00271Pfam:PF09110Pfam:PF09111
Pfam:Q8RWY3Pfscan:PS51192Pfscan:PS51194Pfscan:PS51293PRIDE:Q8RWY3PRO:PR:Q8RWY3PROSITE:PS51192
PROSITE:PS51194PROSITE:PS51293ProteinModelPortal:Q8RWY3Proteomes:UP000006548RefSeq:NP_001189827.1RefSeq:NP_187291.2SMART:SM00487
SMART:SM00490SMART:SM00717STRING:3702.AT3G06400.3SUPFAM:0041827SUPFAM:SSF101224SUPFAM:SSF46689SUPFAM:SSF52540
TAIR:AT3G06400tair10-symbols:CHR11UniGene:At.28209UniGene:At.67057UniProt:Q8RWY3
Coordinates (TAIR10) chr3:+:1941066..1946700
Molecular Weight (calculated) 122435.00 Da
IEP (calculated) 5.63
GRAVY (calculated) -0.82
Length 1055 amino acids
Sequence (TAIR10)
(BLAST)
0001: MARNSNSDEA FSSEEEEERV KDNEEEDEEE LEAVARSSGS DDDEVAAADE SPVSDGEAAP VEDDYEDEED EEKAEISKRE KARLKEMQKL KKQKIQEMLE
0101: SQNASIDADM NNKGKGRLKY LLQQTELFAH FAKSDGSSSQ KKAKGRGRHA SKITEEEEDE EYLKEEEDGL TGSGNTRLLT QPSCIQGKMR DYQLAGLNWL
0201: IRLYENGING ILADEMGLGK TLQTISLLAY LHEYRGINGP HMVVAPKSTL GNWMNEIRRF CPVLRAVKFL GNPEERRHIR EDLLVAGKFD ICVTSFEMAI
0301: KEKTALRRFS WRYIIIDEAH RIKNENSLLS KTMRLFSTNY RLLITGTPLQ NNLHELWALL NFLLPEIFSS AETFDEWFQI SGENDQQEVV QQLHKVLRPF
0401: LLRRLKSDVE KGLPPKKETI LKVGMSQMQK QYYKALLQKD LEAVNAGGER KRLLNIAMQL RKCCNHPYLF QGAEPGPPYT TGDHLITNAG KMVLLDKLLP
0501: KLKERDSRVL IFSQMTRLLD ILEDYLMYRG YLYCRIDGNT GGDERDASIE AYNKPGSEKF VFLLSTRAGG LGINLATADV VILYDSDWNP QVDLQAQDRA
0601: HRIGQKKEVQ VFRFCTESAI EEKVIERAYK KLALDALVIQ QGRLAEQKTV NKDELLQMVR YGAEMVFSSK DSTITDEDID RIIAKGEEAT AELDAKMKKF
0701: TEDAIQFKMD DSADFYDFDD DNKDENKLDF KKIVSDNWND PPKRERKRNY SESEYFKQTL RQGAPAKPKE PRIPRMPQLH DFQFFNIQRL TELYEKEVRY
0801: LMQTHQKNQL KDTIDVEEPE GGDPLTTEEV EEKEGLLEEG FSTWSRRDFN TFLRACEKYG RNDIKSIASE MEGKTEEEVE RYAKVFKERY KELNDYDRII
0901: KNIERGEARI SRKDEIMKAI GKKLDRYRNP WLELKIQYGQ NKGKLYNEEC DRFMICMIHK LGYGNWDELK AAFRTSSVFR FDWFVKSRTS QELARRCDTL
1001: IRLIEKENQE FDERERQARK EKKLAKSATP SKRPLGRQAS ESPSSTKKRK HLSMR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)