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AT3G06380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tubby-like protein 9
Curator
Summary (TAIR10)
Member of TLP family
Computational
Description (TAIR10)
tubby-like protein 9 (TLP9); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 11 (TAIR:AT5G18680.1); Has 949 Blast hits to 946 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 350; Fungi - 19; Plants - 465; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
Protein Annotations
BioGrid:5147eggNOG:ENOG410XQFTeggNOG:KOG2502EMBL:AC011623EMBL:AF487270EMBL:BT026465EMBL:CP002686
EnsemblPlants:AT3G06380EnsemblPlants:AT3G06380.1entrez:819812Gene3D:3.20.90.10GeneID:819812Genevisible:Q9SQU1GO:GO:0003700
GO:GO:0006355GO:GO:0009620GO:GO:0009738GO:GO:0016567GO:GO:0035091Gramene:AT3G06380.1hmmpanther:PTHR16517
hmmpanther:PTHR16517:SF40HOGENOM:HOG000238161InParanoid:Q9SQU1IntAct:Q9SQU1InterPro:IPR000007InterPro:IPR001810InterPro:IPR018066
InterPro:IPR025659KEGG:ath:AT3G06380OMA:NRNTQSYPaxDb:Q9SQU1Pfam:PF00646Pfam:PF01167Pfam:Q9SQU1
PhylomeDB:Q9SQU1PRIDE:Q9SQU1PRINTS:PR01573PRO:PR:Q9SQU1PROSITE:PS01200ProteinModelPortal:Q9SQU1Proteomes:UP000006548
RefSeq:NP_187289.1scanprosite:PS01200SMR:Q9SQU1STRING:3702.AT3G06380.1SUPFAM:SSF54518SUPFAM:SSF81383TAIR:AT3G06380
tair10-symbols:ATTLP9tair10-symbols:TLP9UniGene:At.46725UniPathway:UPA00143UniProt:Q9SQU1
Coordinates (TAIR10) chr3:+:1936384..1938028
Molecular Weight (calculated) 42312.70 Da
IEP (calculated) 10.22
GRAVY (calculated) -0.23
Length 380 amino acids
Sequence (TAIR10)
(BLAST)
001: MTFRSLLQEM RSRPHRVVHA AASTANSSDP FSWSELPEEL LREILIRVET VDGGDWPSRR NVVACAGVCR SWRILTKEIV AVPEFSSKLT FPISLKQSGP
101: RDSLVQCFIK RNRNTQSYHL YLGLTTSLTD NGKFLLAASK LKRATCTDYI ISLRSDDISK RSNAYLGRMR SNFLGTKFTV FDGSQTGAAK MQKSRSSNFI
201: KVSPRVPQGS YPIAHISYEL NVLGSRGPRR MRCIMDTIPM SIVESRGVVA STSISSFSSR SSPVFRSHSK PLRSNSASCS DSGNNLGDPP LVLSNKAPRW
301: HEQLRCWCLN FHGRVTVASV KNFQLVAVSD CEAGQTSERI ILQFGKVGKD MFTMDYGYPI SAFQAFAICL SSFETRIACE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)