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AT3G06290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.913
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SAC3/GANP/Nin1/mts3/eIF-3 p25 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SAC3/GANP/Nin1/mts3/eIF-3 p25 family; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: SAC3/GANP/Nin1/mts3/eIF-3 p25 family (TAIR:AT3G54380.1); Has 1557 Blast hits to 1047 proteins in 222 species: Archae - 0; Bacteria - 35; Metazoa - 487; Fungi - 321; Plants - 148; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5079eggNOG:KOG1860EMBL:AC018907EMBL:CP002686EnsemblPlants:AT3G06290EnsemblPlants:AT3G06290.1entrez:819803
GeneID:819803GO:GO:0034399Gramene:AT3G06290.1hmmpanther:PTHR12436hmmpanther:PTHR12436:SF17InParanoid:F4JAU2IntAct:F4JAU2
InterPro:IPR005062InterPro:IPR031907KEGG:ath:AT3G06290OMA:NWIGMEEPaxDb:F4JAU2PaxDb:Q9M8I9Pfam:PF03399
Pfam:PF16769PRIDE:F4JAU2ProteinModelPortal:F4JAU2Proteomes:UP000006548RefSeq:NP_187280.3STRING:3702.AT3G06290.1TAIR:AT3G06290
UniGene:At.27787UniProt:F4JAU2
Coordinates (TAIR10) chr3:-:1899123..1907297
Molecular Weight (calculated) 189943.00 Da
IEP (calculated) 6.22
GRAVY (calculated) -0.54
Length 1697 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAFRPFGKDL GPMSSKPAPF TPFGASSTTR LYLSFLFLHT ANVGFACSDS SIQPPASQNH SAFAGQSFGP GGIRSGPSIQ RAPPLSASQN PQLSIGKPYR
0101: PGGVQSVPPI NRIPSPSAFQ NPSPSSGQPY QPGGIQRIPE PFNGIAWGPE ASRTSPSVRP YQFPGVQRPN LNPQYGHDGS RNFLKDHGEH SRATSPPATS
0201: HILSRMGTDA VEIGRSQDSK RKSRSDILPD QNMGFSRRNQ SPVSGFENGN LVDGFQPLSS RTWMRSPSSA ENNPVRSRSN PNQLIHQEQT GNSSFPYAHE
0301: VAEIQEATRR KSSAVAPSDK PLGDDPILSQ HDSQRFSTSP PTSGTKSYTL SRSSDSQFPG QPSSVNSFNN ARKTNSSPAT KRTRSPPVYP IEEDIPRNSF
0401: PSQDCTEGEE QARAKRLARF KGELEPIADR PVDIQLTKSP VNKTMKPLDN KQTFNSLESS RDALKGDALP DYENSEQPSL IIGVCPDMCP ESERGERERK
0501: GDLDHYERVD GDRNQTSKSL AVKKYTRTAE REAILIRPMP ILQNTMEYLL SLLDRPYNEN FLGMYNFLWD RMRAIRMDLR MQHIFNQEAI TLLEQMIRLH
0601: IIAMHELCEY TKGEGFSEGF DAHLNIEQMN KTSVELFQMY DDHRKKGITV PTEKEFRGYY ALLKLDKHPG YKVEPSELSL DLANMTPEIR QTSEVLFARN
0701: VARACRTGNF IAFFRLARKA SYLQACLMHA HFSKLRTQAL ASLHSGLQIN QGLPVSDMSN WIGMEEEDIE ALLEYHGFSI KVFEEPYMVK NDLFLHADKD
0801: YKTKCSKLVH MKKSRTIVED VSAPTVVEDV STPFPLPSLI TEATIGNQQC ITAHKHEMPP ARSLKKQTSM RLFDKEVADS KTSLLAEEDK PMGTFVMNPP
0901: GPFVINPVVH QEKQNDLTSA GGFHSPVKLY SPFGSPKFPQ TKSSNLEKQP NDDRIGMSPG EIKFSIIGDV YTNHVPGPAL QQSPKSMPME IMPVTTIAEC
1001: PTSVENKYAL EESVPEAAMI CTLEKEFNDI DEEDEDEDGV ILNQYDEEVA KAKLKLIIRL WKRWSSRQSE LRERRQLAAA AALNSLSLGT PIRFSKTDQS
1101: RACGEFNIDQ AMRRRFEERE KSWSRLNISD VIADILVGRN PESKCISWKV VLCTQTKSVN SSSSASQVTH SAASRWLSSK LMPHAEHSSL NDDNLLFSAP
1201: GVSVWNKWVA NGSDIDFTCC LSVARDVEAE NDMCETTCGA SAVLFLASGG LPLNLQREQL NLILESVPNG SVLPLLVVIS SCNGEHMEPD TDIVSGLGLH
1301: DIDKSKIASF SIVSIANKSQ KGQEVHFFND SRLRDGFKWL ASNSPLQPNL HHVKLRELFL THFSFSLELL KQMPDQEVGP NICISAFNDA LETSRRNITS
1401: AAEANPIGWP CPETMLLEDN RKECLMVKRY LPNLDWSSAE NVELLSSVLE NCKLPDFEDD LTWLTVGCAS GAEIENHTQR LEGCLIEYLT QRSNLMGVSL
1501: ATKETGVMLE RNTRLELHNS SRYHITPRWI GIFQRIFNWR IMGLFDASSS SAYVLKSDLN MSTSSYADKF LAEDASYPSC PPNLPLLHEM IEISCSPLKS
1601: PPPYDDKAQR VVETGMLIDD HRDIEESMLE KNREACRGID LMITEDDELG ERSWRSKGRE AAEKKTIEKR ESERLDELLE KCNMVQNSIA EKLCIYF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)