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AT3G06260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : galacturonosyltransferase-like 4
Curator
Summary (TAIR10)
Encodes a protein with putative galacturonosyltransferase activity.
Computational
Description (TAIR10)
galacturonosyltransferase-like 4 (GATL4); FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 3 (TAIR:AT1G13250.1); Has 2860 Blast hits to 2846 proteins in 632 species: Archae - 2; Bacteria - 1548; Metazoa - 358; Fungi - 53; Plants - 770; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).
Protein Annotations
EC:2.4.1.-eggNOG:ENOG410INQ0eggNOG:ENOG410YCH5EMBL:KJ138839EnsemblPlants:AT3G06260EnsemblPlants:AT3G06260.1entrez:819800
ExpressionAtlas:W8Q6U8Gene3D:3.90.550.10GeneID:819800GO:GO:0016757Gramene:AT3G06260.1hmmpanther:PTHR13778hmmpanther:PTHR13778:SF5
InterPro:IPR002495InterPro:IPR029044KEGG:ath:AT3G06260OMA:CHTNFTKPaxDb:W8Q6U8Pfam:PF01501Pfam:Q9M8J2
PhylomeDB:W8Q6U8ProteinModelPortal:W8Q6U8RefSeq:NP_187277.1SMR:W8Q6U8STRING:3702.AT3G06260.1SUPFAM:SSF53448tair10-symbols:GATL4
TMHMM:TMhelixUniGene:At.40548UniProt:Q9M8J2UniProt:W8Q6U8
Coordinates (TAIR10) chr3:-:1893804..1894859
Molecular Weight (calculated) 40338.90 Da
IEP (calculated) 8.91
GRAVY (calculated) -0.14
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MASRSLSYTQ LLGLLSFILL LVTTTTMAVR VGVILHKPSA PTLPVFREAP AFRNGDQCGT READQIHIAM TLDTNYLRGT MAAVLSLLQH STCPENLSFH
101: FLSLPHFEND LFTSIKSTFP YLNFKIYQFD PNLVRSKISK SIRQALDQPL NYARIYLADI IPSSVDRIIY LDSDLVVVDD IEKLWHVEME GKVVAAPEYC
201: HANFTHYFTR TFWSDPVLVK VLEGKRPCYF NTGVMVVDVN KWRKGMYTQK VEEWMTIQKQ KRIYHLGSLP PFLLIFAGDI KAVNHRWNQH GLGGDNFEGR
301: CRTLHPGPIS LLHWSGKGKP WLRLDSRKPC IVDHLWAPYD LYRSSRHSLE E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)