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AT3G06250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.962
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAR1-related sequence 7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAR1-related sequence 7 (FRS7); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 12 (TAIR:AT5G18960.1); Has 2099 Blast hits to 1278 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 21; Plants - 2069; Viruses - 2; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKWSeggNOG:ENOG4111ADBEMBL:AC018907EMBL:AF360270
EMBL:AY150446EMBL:CP002686EnsemblPlants:AT3G06250EnsemblPlants:AT3G06250.1
entrez:819799GeneID:819799Genevisible:Q9M8J3GO:GO:0005634
GO:GO:0006355GO:GO:0008270Gramene:AT3G06250.1hmmpanther:PTHR31669
hmmpanther:PTHR31669:SF38HOGENOM:HOG000112649InParanoid:Q9M8J3InterPro:IPR004330
InterPro:IPR006564InterPro:IPR007527InterPro:IPR018289InterPro:IPR031052
iPTMnet:Q9M8J3KEGG:ath:AT3G06250OMA:YFQSKQAPANTHER:PTHR31669
PaxDb:Q9M8J3Pfam:PF03101Pfam:PF04434Pfam:PF10551
Pfam:Q9M8J3Pfscan:PS50966PhylomeDB:Q9M8J3PRIDE:Q9M8J3
PRO:PR:Q9M8J3PROSITE:PS50966Proteomes:UP000006548RefSeq:NP_566278.1
SMART:SM00575TAIR:AT3G06250tair10-symbols:FRS7UniGene:At.19021
UniGene:At.74222UniProt:Q9M8J3
Coordinates (TAIR10) chr3:-:1889771..1892065
Molecular Weight (calculated) 87814.50 Da
IEP (calculated) 8.15
GRAVY (calculated) -0.60
Length 764 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVKTYPLGM VGTNNGIAEN EGDSGLEPYV GLEFDTAEEA RDYYNSYATR TGFKVRTGQL YRSRTDGTVS SRRFVCSKEG FQLNSRTGCP AFIRVQRRDT
101: GKWVLDQIQK EHNHDLGGHI EEAQTTPRPS VQQRAPAPTK LGISVPHRPK MKVVDEADKG RSCPSGVISF KRFKGAEDSD GQTQPKATEP YAGLEFNSAN
201: EACQFYQAYA EVVGFRVRIG QLFRSKVDGS ITSRRFVCSK EGFQHPSRMG CGAYMRIKRQ DSGGWIVDRL NKDHNHDLEP GKKNAGMKKI TDDVTGGLDS
301: VDLIELNDLS NHISSTRENT IGKEWYPVLL DYFQSKQAED MGFFYAIELD SNGSCMSIFW ADSRSRFACS QFGDAVVFDT SYRKGDYSVP FATFIGFNHH
401: RQPVLLGGAL VADESKEAFS WLFQTWLRAM SGRRPRSMVA DQDLPIQQAV AQVFPGTHHR FSAWQIRSKE RENLRSFPNE FKYEYEKCLY QSQTTVEFDT
501: MWSSLVNKYG LRDNMWLREI YEKREKWVPA YLRASFFGGI HVDGTFDPFY GTSLNSLTSL REFISRYEQG LEQRREEERK EDFNSYNLQP FLQTKEPVEE
601: QCRRLYTLTI FRIFQSELAQ SYNYLGLKTY EEGAISRFLV RKCGNENEKH AVTFSASNLN ASCSCQMFEY EGLLCRHILK VFNLLDIREL PSRYILHRWT
701: KNAEFGFVRD VESGVTSQDL KALMIWSLRE AASKYIEFGT SSLEKYKLAY EIMREGGKKL CWQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)