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AT3G06220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G06160.2); Has 363 Blast hits to 340 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 363; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB493604EMBL:AC018907EMBL:CP002686EMBL:DQ446640EMBL:DQ653069EnsemblPlants:AT3G06220EnsemblPlants:AT3G06220.1
entrez:819796Gene3D:2.40.330.10GeneID:819796Genevisible:Q1PES7GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT3G06220.1hmmpanther:PTHR31920hmmpanther:PTHR31920:SF15HOGENOM:HOG000155280InParanoid:Q1PES7InterPro:IPR003340
InterPro:IPR015300KEGG:ath:AT3G06220OMA:VTPMPVEPaxDb:Q1PES7Pfam:PF02362Pfam:Q1PES7Pfscan:PS50863
PhylomeDB:Q1PES7PRIDE:Q1PES7PRO:PR:Q1PES7PROSITE:PS50863ProteinModelPortal:Q1PES7Proteomes:UP000006548RefSeq:NP_187273.2
SMART:SM01019SMR:Q1PES7SUPFAM:SSF101936TAIR:AT3G06220UniGene:At.53201UniProt:Q1PES7
Coordinates (TAIR10) chr3:-:1883672..1884720
Molecular Weight (calculated) 19412.40 Da
IEP (calculated) 4.04
GRAVY (calculated) -0.41
Length 174 amino acids
Sequence (TAIR10)
(BLAST)
001: MASGDVLPRF YTVFLSCVSS NSLLIPRSYY EHLPRRLPKT AILTGTGGRV WKVAMMSKRE QVYLARGWEN FVADNELKDG EFLTFVFDGY KSYEVSIYGR
101: GSCKETRAVV HVEEISDESE SDNDSLGSLV DVTPMPAEEN SDDTEGDNDS CDSVVDVTPM PVEEISDASD SDYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)