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AT3G06170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Serinc-domain containing serine and sphingolipid biosynthesis protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Serinc-domain containing serine and sphingolipid biosynthesis protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT1G16180.2); Has 780 Blast hits to 771 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 443; Fungi - 127; Plants - 140; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP7KeggNOG:KOG2592EMBL:BT023726EMBL:CP002686EnsemblPlants:AT3G06170EnsemblPlants:AT3G06170.1entrez:819791
GeneID:819791GO:GO:0016021Gramene:AT3G06170.1hmmpanther:PTHR10383hmmpanther:PTHR10383:SF24HOGENOM:HOG000165463InterPro:IPR005016
KEGG:ath:AT3G06170OMA:HDYVCNGPANTHER:PTHR10383Pfam:PF03348PhylomeDB:Q494Q0Proteomes:UP000006548RefSeq:NP_187268.2
STRING:3702.AT3G06170.1TAIR:AT3G06170TMHMM:TMhelixUniGene:At.47823UniProt:Q494Q0
Coordinates (TAIR10) chr3:+:1867520..1869738
Molecular Weight (calculated) 44879.70 Da
IEP (calculated) 7.01
GRAVY (calculated) 0.58
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: MACCLASCCA SATCGLCSSV ASGISRKSAR IAYCGLFGAS LVVSWILRET GAPLLEKLPW INTSDSYTKE WYQQQAVLRV SFGNFLFFAI YALIMIGVKD
101: QNDRRDSWHH GGWGLKMIVW FLLVVLMFFV PNVIVSLYGT LSKFGAGAFL LVQVVLLLDA THNWNDSWVE KDEKKWYIAL LVISIVCYIA TYTFSGILFI
201: WFNPSGQDCG LNVFFIVMPM ILAFVFAIIA LHPAVNGSLL PASVISVYCA YVCYTGLSSE PHDYVCNGLN KSKAVNASTL ILGMLTTVLS VLYSALRAGS
301: STTFLSPPSS PRSGVKDALL GDPEDGKKSG EAEARPVSYS YSFFHIIFAL ASMYAAMLLS GWTDSSESAT LIDVGWTSVW VKICTGWVTA GLYIWTLIAP
401: LILPDREFY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)