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AT3G06150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.617
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19060.1); Has 61 Blast hits to 59 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH8ReggNOG:ENOG41103FSEMBL:AC018907EMBL:CP002686EnsemblPlants:AT3G06150EnsemblPlants:AT3G06150.1entrez:819789
GeneID:819789Gramene:AT3G06150.1hmmpanther:PTHR35124HOGENOM:HOG000029562KEGG:ath:AT3G06150OMA:PELRSCKPhylomeDB:Q9M8K3
Proteomes:UP000006548RefSeq:NP_187266.1TAIR:AT3G06150UniGene:At.40563UniProt:Q9M8K3
Coordinates (TAIR10) chr3:-:1861971..1863755
Molecular Weight (calculated) 67577.90 Da
IEP (calculated) 9.10
GRAVY (calculated) -0.33
Length 594 amino acids
Sequence (TAIR10)
(BLAST)
001: MPEKGMIFPP VPSQLVILRP SPLLQWRLGA LTALVCFLML VVWSIDGCSI QSFVQPWRFN AYSVRISPSP SPFMSTKPNL VSEKPHRQNL TLMMAPRNLV
101: PKKTNLTSNS TRVQFEWITA GSQKNFTANL MRGWLAPGGA PCREAKTVEI SVPGVDGIDS VELTAGEIHE FKFQAIDESG KNVCIGGDYF ETDISGENWK
201: SRPPVKDFGN GTYSFSLQVH PEFAGDFNLT VILLFRHYQG LKFSTSRLGF DRKLRNVRLR FVKTPDVTLP ELRSCKKSDF NRDAWSGRWT RLGKNDECQI
301: SNDGRYRCLA ADFPCRKPWC DGAVGAIESN GWVYSSHCSF KLFSAEKAWD CLKGKWIFFW GDSNHVDSIR NLLNFVLGHP EIPAVPRRFD MKFSNPKNPS
401: ETVRITSIFN GHWNETKNYQ GLDSLKDRDF RELLKKYFNE ETNRVPDVMI VNSGLHDGIH WTSLRAFAKG AETAAAFWRE VFDGVKSRGL QPPEVIFRNT
501: IATGGYARML AFNPSKMEAF NGVFLEKMRD AGLVTSVVDN FDMTYPWHYD NRCNDGVHYG RAPAKMRWRD GEIGHQYFVD LMLVHVLLNA LCVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)