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AT3G06140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G19080.1); Has 7743 Blast hits to 5478 proteins in 376 species: Archae - 2; Bacteria - 144; Metazoa - 2405; Fungi - 531; Plants - 3352; Viruses - 272; Other Eukaryotes - 1037 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410XRAEeggNOG:KOG4265EMBL:AC018907
EMBL:AY088059EMBL:BT028998EMBL:CP002686EnsemblPlants:AT3G06140
EnsemblPlants:AT3G06140.1entrez:819787Gene3D:3.30.40.10GeneID:819787
Genevisible:Q8LA32GO:GO:0004842GO:GO:0008270GO:GO:0016874
Gramene:AT3G06140.1hmmpanther:PTHR22996hmmpanther:PTHR22996:SF4HOGENOM:HOG000239918
InParanoid:Q8LA32InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT3G06140
OMA:AKEGPNCPaxDb:Q8LA32Pfam:PF13920Pfam:Q8LA32
Pfscan:PS50089PRIDE:Q8LA32PRO:PR:Q8LA32PROSITE:PS50089
ProteinModelPortal:Q8LA32Proteomes:UP000006548RefSeq:NP_566274.1SMART:SM00184
SMR:Q8LA32STRING:3702.AT3G06140.1SUPFAM:SSF57850TAIR:AT3G06140
UniGene:At.27569UniPathway:UPA00143UniProt:Q8LA32
Coordinates (TAIR10) chr3:-:1856993..1858777
Molecular Weight (calculated) 41007.30 Da
IEP (calculated) 6.34
GRAVY (calculated) -0.66
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MGISFSNNNR RRDNNNRRHL HHYPPPPPYY YLDPPPPPPP FPPHYDYNYS NYHLSPPLPP QPQINSCSYG HYHYHPQPPQ YFTTAQPNWW GPMMRPAYYC
101: PPQPQTQPPK PYLEQQNAKK VRNDVNVHRD TVRLEVDDLV PGHHLVSFVF DALFDGSFTI TFFAKEEPNC TIIPQFPEVY SPTRFHFQKG PGQKFLQPSG
201: TGTDLSFFVL DDLSKPLEED VYPLVISAET IISPNSISEQ SSVHKQVTQA VLEKDNDGSF KVKVVKQILW IEGVRYELRE LYGSTTQGAA SGLDESGSGT
301: ECVICMTEAK DTAVLPCRHL CMCSDCAKEL RLQSNKCPIC RQPIEELLEI KMNSSDEQH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)