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AT3G06080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.932
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF828)
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 10 (TBL10); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 11 (TAIR:AT5G19160.1); Has 1282 Blast hits to 1271 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1282; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFMHeggNOG:ENOG410YIU5EMBL:AC018907EMBL:AC068073EMBL:AY059837EMBL:BT008735EMBL:CP002686
EnsemblPlants:AT3G06080EnsemblPlants:AT3G06080.1EnsemblPlants:AT3G06080.2entrez:819781ExpressionAtlas:Q9LDG2GeneID:819781Genevisible:Q9LDG2
GO:GO:0005794GO:GO:0007623GO:GO:0016021GO:GO:0016413GO:GO:0071554hmmpanther:PTHR32285hmmpanther:PTHR32285:SF65
HOGENOM:HOG000238066InParanoid:Q9LDG2InterPro:IPR025846InterPro:IPR026057InterPro:IPR029962KEGG:ath:AT3G06080OMA:NHEKTIK
PANTHER:PTHR32285PaxDb:Q9LDG2Pfam:PF13839Pfam:PF14416PhylomeDB:Q9LDG2PRIDE:Q9LDG2PRO:PR:Q9LDG2
Proteomes:UP000006548RefSeq:NP_566270.1RefSeq:NP_974235.1STRING:3702.AT3G06080.2TAIR:AT3G06080tair10-symbols:TBL10TMHMM:TMhelix
UniGene:At.23540UniProt:Q93YQ2
Coordinates (TAIR10) chr3:-:1835462..1837524
Molecular Weight (calculated) 40203.60 Da
IEP (calculated) 8.65
GRAVY (calculated) -0.42
Length 346 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKNSNVEEN GGAKPICEAL RRFKRSRLVF EPSLGVLGFF LVGVCLVCSF FFFDYRSVAK SYGLSDKSER FVWLKFDNIS SSSSSSSNSS KRVGFLEESG
101: SGCDVFDGDW VWDESYPLYQ SKDCRFLDEG FRCSDFGRSD LFYTQWRWQP RHCNLPRFDA KLMLEKLRDK RLVFVGDSIG RNQWESLLCL LSSAVKNESL
201: IYEINGSPIT KHKGFLVFKF EEYNCTVEYY RSPFLVPQSR PPIGSPGKVK TSLKLDTMDW TSSKWRDADV LVLNTGHWWN EGKTTRTGCY FQEGEEVKLK
301: MNVDDAYKRA LNTVVKWIHT ELDSNKTQVF FRTFAPVHFR FVRYYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)