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AT3G06070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:819780eggNOG:ENOG410J3ISeggNOG:ENOG410ZH4AEMBL:AK228791EMBL:AY085479EMBL:BT028908EMBL:CP002686
EnsemblPlants:AT3G06070EnsemblPlants:AT3G06070.1entrez:819780GeneID:819780Gramene:AT3G06070.1hmmpanther:PTHR34956hmmpanther:PTHR34956:SF2
HOGENOM:HOG000005704KEGG:ath:AT3G06070OMA:SATPYMMPhylomeDB:Q8LED7Proteomes:UP000006548RefSeq:NP_566269.1STRING:3702.AT3G06070.1
TAIR:AT3G06070UniGene:At.40573UniProt:Q8LED7
Coordinates (TAIR10) chr3:-:1831305..1831846
Molecular Weight (calculated) 17451.30 Da
IEP (calculated) 8.03
GRAVY (calculated) -0.87
Length 151 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMELELDDD VFFADISKQL NLLITDEDEQ NPISLSSSVS FQGLFRGNYQ TSATPYMMYN EQINYNVIRE SKGTGVFIPR SSQPRRKHNH HPHQKKQGRF
101: IGSFIPKQQF PHHGHDNNLT TLNNNNQESI TFHHASTNPR RTYRDAASLF T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)