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AT3G06050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23444301 (2013): mitochondrion
  • PMID:23444301 (2013): mitochondrion mitochondrial matrix
  • PMID:22923678 (2012): mitochondrion
  • PMID:21841088 (2011): mitochondrion
  • PMID:21472856 (2011): mitochondrion
  • PMID:21296373 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:18385124 (2008): mitochondrion
  • PMID:14671022 (2004): mitochondrion
  • PMID:12492832 (2002): mitochondrion
  • PMID:11743114 (2001): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : peroxiredoxin IIF
Curator
Summary (TAIR10)
Encodes a mitochondrial matrix localized peroxiredoxin involved in redox homeostasis. Knockout mutants have reduced root growth under certain oxidative stress conditions.
Computational
Description (TAIR10)
peroxiredoxin IIF (PRXIIF); FUNCTIONS IN: peroxidase activity, antioxidant activity; INVOLVED IN: response to oxidative stress, response to cadmium ion; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G60740.1); Has 3925 Blast hits to 3925 proteins in 881 species: Archae - 6; Bacteria - 1549; Metazoa - 168; Fungi - 305; Plants - 221; Viruses - 0; Other Eukaryotes - 1676 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G06050-MONOMERBioGrid:5113EC:1.11.1.15eggNOG:COG0678eggNOG:KOG0541EMBL:AC068073EMBL:AY052278
EMBL:AY085396EMBL:AY098963EMBL:CP002686EnsemblPlants:AT3G06050EnsemblPlants:AT3G06050.1entrez:819778Gene3D:3.40.30.10
GeneID:819778Genevisible:Q9M7T0GO:GO:0004601GO:GO:0005739GO:GO:0005759GO:GO:0006979GO:GO:0046686
GO:GO:0051920GO:GO:0098869Gramene:AT3G06050.1hmmpanther:PTHR10430hmmpanther:PTHR10430:SF7HOGENOM:HOG000255884InParanoid:Q9M7T0
InterPro:IPR012336InterPro:IPR013740iPTMnet:Q9M7T0KEGG:ath:AT3G06050MINT:MINT-8060333OMA:VNDPYTMPaxDb:Q9M7T0
PeroxiBase:4354Pfam:PF08534Pfam:Q9M7T0Pfscan:PS51352PhylomeDB:Q9M7T0PRIDE:Q9M7T0PRO:PR:Q9M7T0
PROSITE:PS51352ProteinModelPortal:Q9M7T0Proteomes:UP000006548Reactome:R-ATH-3299685Reactome:R-ATH-5628897RefSeq:NP_566268.1SMR:Q9M7T0
STRING:3702.AT3G06050.1SUPFAM:SSF52833SwissPalm:Q9M7T0TAIR:AT3G06050tair10-symbols:ATPRXIIFtair10-symbols:PRXIIFUniGene:At.20442
UniProt:Q9M7T0
Coordinates (TAIR10) chr3:-:1826311..1827809
Molecular Weight (calculated) 21446.60 Da
IEP (calculated) 9.39
GRAVY (calculated) -0.10
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMSILKLRN LSALRSAANS ARIGVSSRGF SKLAEGTDIT SAAPGVSLQK ARSWDEGVSS KFSTTPLSDI FKGKKVVIFG LPGAYTGVCS QQHVPSYKSH
101: IDKFKAKGID SVICVSVNDP FAINGWAEKL GAKDAIEFYG DFDGKFHKSL GLDKDLSAAL LGPRSERWSA YVEDGKVKAV NVEEAPSDFK VTGAEVILGQ
201: I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)