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AT3G06035.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
AdaBoost: nucleusBaCelLo: endoplasmic reticulumBaCelLo: extracellularBaCelLo: golgi
EpiLoc: golgiiPSORT: endoplasmic reticulumiPSORT: extracellulariPSORT: golgi
MultiLoc: extracellularPlant-mPloc: plasma membranePredotar: endoplasmic reticulumPredotar: extracellular
Predotar: golgiPredSL: endoplasmic reticulumPredSL: extracellularPredSL: golgi
PProwler: endoplasmic reticulumPProwler: extracellularPProwler: golgiSLPFA: endoplasmic reticulum
SLPFA: extracellularSLPFA: golgiSLP-Local: endoplasmic reticulumSLP-Local: extracellular
SLP-Local: golgiSubLoc: extracellularTargetP: endoplasmic reticulumTargetP: extracellular
TargetP: golgiWoLF PSORT: plastidYLoc: extracellular
 AmiGO : plasma membrane 17317660
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:23990937 (2013): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycoprotein membrane precursor GPI-anchored
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 Glycoprotein membrane precursor GPI-anchored; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Glycoprotein membrane precursor GPI-anchored (TAIR:AT5G19250.1); Has 86 Blast hits to 85 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY5PeggNOG:ENOG410YJI0EMBL:AK227992EnsemblPlants:AT3G06035
EnsemblPlants:AT3G06035.1entrez:819776ExpressionAtlas:Q0WSE0GeneID:819776
GO:GO:0016021Gramene:AT3G06035.1hmmpanther:PTHR33976hmmpanther:PTHR33976:SF1
KEGG:ath:AT3G06035OMA:FKNKPCTPaxDb:Q0WSE0Pfam:Q84MC0
PhylomeDB:Q0WSE0PRIDE:Q0WSE0RefSeq:NP_566267.1STRING:3702.AT3G06035.1
TAIR:AT3G06035TMHMM:TMhelixUniGene:At.40575UniProt:Q0WSE0
UniProt:Q84MC0
Coordinates (TAIR10) chr3:-:1823172..1824110
Molecular Weight (calculated) 22054.30 Da
IEP (calculated) 4.25
GRAVY (calculated) 0.02
Length 200 amino acids
Sequence (TAIR10)
(BLAST) 		001: MAIDKLPLLL FLSILLCLNR PVLSDTDEED ILLTGINSYR TTQNLTILSK NENAECLADE IADQFKNKPC TNDTGSATVP GTEPQFANYP QILAKCHLNV
101: SDTRDGSIMP ACVPRLESNL VLTNFTKSQY SMSLNDSKFT GIGIGKEDDW IVVVLTTNTP EGSYSTATPT KQESNGFTFG IGLVSYLVIF MYSSFCFFLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)