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AT3G06035.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 17317660
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycoprotein membrane precursor GPI-anchored
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycoprotein membrane precursor GPI-anchored; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Glycoprotein membrane precursor GPI-anchored (TAIR:AT5G19250.1); Has 86 Blast hits to 85 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY5PeggNOG:ENOG410YJI0EMBL:AK227992EnsemblPlants:AT3G06035EnsemblPlants:AT3G06035.1entrez:819776ExpressionAtlas:Q0WSE0
GeneID:819776GO:GO:0016021Gramene:AT3G06035.1hmmpanther:PTHR33976hmmpanther:PTHR33976:SF1KEGG:ath:AT3G06035OMA:FKNKPCT
PaxDb:Q0WSE0Pfam:Q84MC0PhylomeDB:Q0WSE0PRIDE:Q0WSE0RefSeq:NP_566267.1STRING:3702.AT3G06035.1TAIR:AT3G06035
TMHMM:TMhelixUniGene:At.40575UniProt:Q0WSE0UniProt:Q84MC0
Coordinates (TAIR10) chr3:-:1823172..1824110
Molecular Weight (calculated) 22054.30 Da
IEP (calculated) 4.25
GRAVY (calculated) 0.02
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIDKLPLLL FLSILLCLNR PVLSDTDEED ILLTGINSYR TTQNLTILSK NENAECLADE IADQFKNKPC TNDTGSATVP GTEPQFANYP QILAKCHLNV
101: SDTRDGSIMP ACVPRLESNL VLTNFTKSQY SMSLNDSKFT GIGIGKEDDW IVVVLTTNTP EGSYSTATPT KQESNGFTFG IGLVSYLVIF MYSSFCFFLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)