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AT3G06010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeotic gene regulator
Curator
Summary (TAIR10)
Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.
Computational
Description (TAIR10)
ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2662-MONOMERBioGrid:5107EC:3.6.4.12eggNOG:ENOG410IUMPeggNOG:ENOG410XNUTEMBL:AC013454EMBL:CP002686
EnsemblPlants:AT3G06010EnsemblPlants:AT3G06010.1entrez:819772Gene3D:3.40.50.300GeneID:819772Genevisible:F4J9M5GO:GO:0004386
GO:GO:0005524GO:GO:0005634GO:GO:0010078GO:GO:0010492GO:GO:0016568GO:GO:0040008Gramene:AT3G06010.1
hmmpanther:PTHR10799hmmpanther:PTHR10799:SF640InParanoid:F4J9M5InterPro:IPR000330InterPro:IPR001650InterPro:IPR014001InterPro:IPR027417
InterPro:IPR029295iPTMnet:F4J9M5KEGG:ath:AT3G06010KO:K11647ncoils:CoilOMA:SIYHGGDPaxDb:F4J9M5
Pfam:F4J9M5Pfam:PF00176Pfam:PF00271Pfam:PF14619Pfscan:PS51192Pfscan:PS51194PRIDE:F4J9M5
PRO:PR:F4J9M5PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:F4J9M5Proteomes:UP000006548RefSeq:NP_187252.2SMART:SM00487
SMART:SM00490SMART:SM01314SMR:F4J9M5STRING:3702.AT3G06010.1SUPFAM:SSF52540TAIR:AT3G06010tair10-symbols:ATCHR12
UniGene:At.40578UniProt:F4J9M5
Coordinates (TAIR10) chr3:-:1802435..1807284
Molecular Weight (calculated) 126742.00 Da
IEP (calculated) 6.50
GRAVY (calculated) -0.68
Length 1102 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVAQQLQERC GGTSQEDPVE TTKSLICALN YISRDLPLPP HLFTAVSSIY HGASSSSLSD SDVSPPLPTS PPANKAPYGA DLMGEFEDAL LKQRPDCESG
0101: SRLIQLLDNR NKSHIQRRLS ELEELPSTRG EDLQAKCLLE LYGLKLRELQ GKVRTAVSSE FWLRLNCADV SSQVFDWGMM RLPRPFYGVG DPFAMEADDQ
0201: FRKKRDAERL SRLEEEEKNL IETAKRKFFA EVLNAVREFQ LQIQATQKRR RQRNDGVQAW HGRQRQRATR AEKLRLMALK SDDQEAYMKL VKESKNERLT
0301: TLLEETNKLL ANLGAAVQRQ KDAKLPEGID LLKDSESDLS ELDAPRSEPL QDLLPDQDID ITESDNNDDS NDLLEGQRQY NSAIHSIQEK VTEQPSLLEG
0401: GELRSYQLEG LQWMVSLFNN NLNGILADEM GLGKTIQTIS LIAYLLENKG VPGPYLIVAP KAVLPNWVNE FATWVPSIAA FLYDGRLEER KAIREKIAGE
0501: GKFNVLITHY DLIMRDKAFL KKIEWYYMIV DEGHRLKNHE SALAKTLLTG YRIKRRLLLT GTPIQNSLQE LWSLLNFLLP HIFNSVQNFE EWFNAPFADR
0601: GNVSLTDEEE LLIIHRLHHV IRPFILRRKK DEVEKFLPGK TQVILKCDMS AWQKVYYKQV TDMGRVGLQT GSGKSKSLQN LTMQLRKCCN HPYLFVGGDY
0701: NMWKKPEIVR ASGKFELLDR LLPKLRKAGH RILLFSQMTR LIDVLEIYLT LNDYKYLRLD GTTKTDQRGL LLKQFNEPDS PYFMFLLSTR AGGLGLNLQT
0801: ADTVIIFDSD WNPQMDQQAE DRAHRIGQKK EVRVFVLVSV GSVEEVILER AKQKMGIDAK VIQAGLFNTT STAQDRREML EEIMRKGTSS LGTDVPSERE
0901: INRLAARSED EFWMFERMDE ERRRKENYRA RLMQEQEVPE WAYTTQTQEE KLNNGKFHFG SVTGKRKRKE IVYSDTLSEL QWLKAVESGE DLSKLSMRYN
1001: RREENASNTK TSTSKKVIES IQTVSDGTSE EDEEEQEEER AKEMSGKQRV DKSEEEEEEG EEENDGKAIF KWNTHKKKRS RYSFTCSSSD SRAQSSNGSR
1101: RK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)