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AT3G05900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.937
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:24397334 (2014): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22215637 (2012): plasma membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:20423899 (2010): plastid
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : neurofilament protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
neurofilament protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 108105 Blast hits to 59732 proteins in 2949 species: Archae - 957; Bacteria - 23784; Metazoa - 40626; Fungi - 12056; Plants - 5351; Viruses - 591; Other Eukaryotes - 24740 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J67FeggNOG:ENOG410Z6K9EMBL:CP002686EnsemblPlants:AT3G05900EnsemblPlants:AT3G05900.1entrez:819759GeneID:819759
Gramene:AT3G05900.1hmmpanther:PTHR37729hmmpanther:PTHR37729:SF1InParanoid:F4J9K9iPTMnet:F4J9K9KEGG:ath:AT3G05900ncoils:Coil
OMA:ESKGMIGPaxDb:F4J9K9PRIDE:F4J9K9ProteinModelPortal:F4J9K9Proteomes:UP000006548RefSeq:NP_187241.2STRING:3702.AT3G05900.1
TAIR:AT3G05900UniGene:At.43956UniGene:At.73215UniProt:F4J9K9
Coordinates (TAIR10) chr3:-:1761408..1763854
Molecular Weight (calculated) 73457.50 Da
IEP (calculated) 4.00
GRAVY (calculated) -0.94
Length 673 amino acids
Sequence (TAIR10)
(BLAST)
001: MASDSHTPTV TTPEKPLENK VSEEAKLMEK EIISSDSADV VNDKPASDSN PVVTKEEEID QTPAGEPEKE SPAVVEEVGA VVKAEESTET VKHENGEKGA
101: EQVELKEPIL VKETVAEVNV ETVDTEKAEE KQTVENVLIE DHKDQEETKI VDVSESTDEA EVQQVEPVDV QPVKDAEKAE EKPTVESVVE EETKDREETK
201: IVDVSESAGD KQVESVDVQS VRDVSAEIAE EKVKDVEALE VEPKPETSEK VETQLEKARE LETEVEVVKA EETAEATEQA KVELEGKLED VIVEEKDSEI
301: NSKDEKTSES GSALCSEEIL STIQESNTDP IKETEGDASY PIDVIEKAIT EEKHVVDEPA NEEKPSESSA ALSPEKVVPI NQDSDTKPKE ETEGDAAAPA
401: DVIEKAITEE KYVVDEPSKD ETTSESGSAL CPEKAVPTNQ DLDTEPKKET EEDVSSPADI IEKAITEEKH VVEEPSKDEK TSESGSALSP EKVVPTNQDS
501: DTEPKKETEG DVPSPADVIE KAITDEKHVV EEPLKDEQEN VSEAKDVVTK LAAEDENIKK DTDTPVAEGK SEETLKETDT ESVEKEAAAN KQEEPITEKV
601: AEVVETAPVA KEIDEAKQQP EVTTKEAPAK QKHSNSIISK VKQSLVKAKK AIIGRSPSSK TITTEEPKEE IKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)