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AT3G05890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Low temperature and salt responsive protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RARE-COLD-INDUCIBLE 2B (RCI2B); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT3G05880.1); Has 1391 Blast hits to 1391 proteins in 471 species: Archae - 0; Bacteria - 653; Metazoa - 37; Fungi - 280; Plants - 382; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0401eggNOG:KOG1773EMBL:AK176253EMBL:AK228716
EMBL:BT026006EnsemblPlants:AT3G05890EnsemblPlants:AT3G05890.1entrez:819758
ExpressionAtlas:Q67Z65GeneID:819758GO:GO:0016021Gramene:AT3G05890.1
hmmpanther:PTHR21659hmmpanther:PTHR21659:SF19InterPro:IPR000612KEGG:ath:AT3G05890
OMA:GVIHAFIPANTHER:PTHR21659Pfam:PF01679Pfam:Q9ZNS6
PhylomeDB:Q67Z65PROSITE:PS01309RefSeq:NP_187240.1scanprosite:PS01309
STRING:3702.AT3G05890.1TAIR:AT3G05890tair10-symbols:RCI2BTMHMM:TMhelix
UniGene:At.22481UniProt:Q67Z65UniProt:Q9ZNS6
Coordinates (TAIR10) chr3:-:1758179..1758452
Molecular Weight (calculated) 6081.94 Da
IEP (calculated) 8.20
GRAVY (calculated) 1.55
Length 54 amino acids
Sequence (TAIR10)
(BLAST)
1: MSTATFVEII LAIILPPLGV FLKFGCKVEF WICLILTLFG YLPGILYALY IITK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)