suba logo
AT3G05860.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MADS-box transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MADS-box transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo, endosperm; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 46 (TAIR:AT2G28700.1); Has 5309 Blast hits to 5302 proteins in 621 species: Archae - 0; Bacteria - 0; Metazoa - 516; Fungi - 285; Plants - 4425; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:CP002686EnsemblPlants:AT3G05860EnsemblPlants:AT3G05860.1entrez:819755ExpressionAtlas:F4J9K3
GeneID:819755GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT3G05860.1hmmpanther:PTHR11945
hmmpanther:PTHR11945:SF153InParanoid:F4J9K3InterPro:IPR002100OMA:TRENTIKPaxDb:F4J9K3Pfam:PF00319Pfscan:PS50066
PRIDE:F4J9K3PRINTS:PR00404PROSITE:PS50066ProteinModelPortal:F4J9K3Proteomes:UP000006548RefSeq:NP_187237.2SMART:SM00432
SMR:F4J9K3STRING:3702.AT3G05860.1SUPFAM:SSF55455TAIR:AT3G05860UniGene:At.40604UniProt:F4J9K3
Coordinates (TAIR10) chr3:-:1751406..1752355
Molecular Weight (calculated) 30418.10 Da
IEP (calculated) 7.73
GRAVY (calculated) -0.91
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRKKLNLSY ITNESMRKAT FNKRKKGLVK KIHELSVLCG IEACAVIYSP FNSNPEVWPS NSEVKNVMEN FEMLTKLEQE KKMVSHEGFI RQNISKTMES
101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQNPNFNHLS
201: HNQYQYQQQF GYPILVQDGI YNPSQIQNQH EEWLDDHMMN HSKEISHPLM DDNNFYYQQP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)