AT3G05860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MADS-box transcription factor family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MADS-box transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo, endosperm; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 46 (TAIR:AT2G28700.1); Has 5309 Blast hits to 5302 proteins in 621 species: Archae - 0; Bacteria - 0; Metazoa - 516; Fungi - 285; Plants - 4425; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1751406..1752355 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30418.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.73 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.91 | ||||||||||||||||||||||||||||||||||||
| Length | 260 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTRKKLNLSY ITNESMRKAT FNKRKKGLVK KIHELSVLCG IEACAVIYSP FNSNPEVWPS NSEVKNVMEN FEMLTKLEQE KKMVSHEGFI RQNISKTMES 101: NNKKMIDNAE RTMKEAMFQL LSGKGEKLNL TDRNREDLCK YIDQYLKELY HHKNKTINQS HIEPGESSGA TNAMTPTSVV EPIISSIQRP NQNPNFNHLS 201: HNQYQYQQQF GYPILVQDGI YNPSQIQNQH EEWLDDHMMN HSKEISHPLM DDNNFYYQQP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)