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AT3G05800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At3g05800-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 (AIF1); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G09250.1); Has 150 Blast hits to 150 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXE8eggNOG:ENOG411041WEMBL:AB493603EMBL:AY086128EnsemblPlants:AT3G05800EnsemblPlants:AT3G05800.1entrez:819749
ExpressionAtlas:C0SVA0GeneID:819749GO:GO:0003700Gramene:AT3G05800.1hmmpanther:PTHR33124hmmpanther:PTHR33124:SF12InterPro:IPR011598
KEGG:ath:AT3G05800OMA:SHISRRWPaxDb:C0SVA0Pfam:Q9M9L6Pfscan:PS50888PhylomeDB:C0SVA0PRIDE:C0SVA0
PROSITE:PS50888ProteinModelPortal:C0SVA0RefSeq:NP_566260.1STRING:3702.AT3G05800.1SUPFAM:SSF47459TAIR:AT3G05800tair10-symbols:AIF1
UniGene:At.40615UniProt:C0SVA0UniProt:Q9M9L6
Coordinates (TAIR10) chr3:+:1727476..1728111
Molecular Weight (calculated) 23186.00 Da
IEP (calculated) 12.33
GRAVY (calculated) -0.50
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSEQGNGSN PSTSPEVEGT KTIPFRRRLQ RGQRVFAPKL MEALRRSRVS SEEAPVRHLS RRWRATTAQK VYSLKLYDAL QRSRRSATVR DTADKVLATT
101: ARGATRWSRA ILVSRFGTSL RRRRNTKPAS ALAAAIRGSG GSGRRRKLSA VGNRVRVLGG LVPGCRRTAL PELLDETADY IAALEMQVRA MTALSKILSE
201: LQPSTNLGSA L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)