suba logo
AT3G05660.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 0.822
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : receptor like protein 33
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
receptor like protein 33 (RLP33); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 32 (TAIR:AT3G05650.1); Has 122499 Blast hits to 32804 proteins in 1196 species: Archae - 55; Bacteria - 8957; Metazoa - 28470; Fungi - 1471; Plants - 73451; Viruses - 13; Other Eukaryotes - 10082 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:CP002686EnsemblPlants:AT3G05660EnsemblPlants:AT3G05660.1entrez:819733Gene3D:3.80.10.10
GeneID:819733GO:GO:0009507GO:GO:0016021Gramene:AT3G05660.1hmmpanther:PTHR27004hmmpanther:PTHR27004:SF37InParanoid:F4J8G2
InterPro:IPR001611InterPro:IPR003591InterPro:IPR013210InterPro:IPR032675KEGG:ath:AT3G05660OMA:YLSHSNTPaxDb:F4J8G2
Pfam:PF00560Pfam:PF08263Pfam:PF13516Pfam:PF13855PRIDE:F4J8G2ProteinModelPortal:F4J8G2Proteomes:UP000006548
RefSeq:NP_187217.2SMART:SM00369SMR:F4J8G2STRING:3702.AT3G05660.1SUPFAM:SSF52058TAIR:AT3G05660tair10-symbols:AtRLP33
tair10-symbols:RLP33TMHMM:TMhelixUniGene:At.49590UniProt:F4J8G2
Coordinates (TAIR10) chr3:-:1649258..1652001
Molecular Weight (calculated) 97619.40 Da
IEP (calculated) 8.10
GRAVY (calculated) -0.08
Length 875 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLIPITFYF LFLFFSNFRG VFAVPNIHLC HFEQRDALLE FKNEFKIKKP CFGCPSPLKT KSWENGSDCC HWDGITCDAK TGEVIEIDLM CSCLHGWFHS
101: NSNLSMLQNF HFLTTLDLSY NHLSGQISSS IGNLSHLTTL DLSGNNFSGW IPSSLGNLFH LTSLHLYDNN FGGEIPSSLG NLSYLTFLDL STNNFVGEIP
201: SSFGSLNQLS ILRLDNNKLS GNLPLEVINL TKLSEISLSH NQFTGTLPPN ITSLSILESF SASGNNFVGT IPSSLFTIPS ITLIFLDNNQ LSGTLEFGNI
301: SSPSNLLVLQ LGGNNLRGPI PTSISRLVNL RTLDLSHFNI QGQVDFNIFS HLKLLGNLYL SHSNTTTTID LNAVLSCFKM LISLDLSGNH VLVTNKSSVS
401: DPPLGLIGSL NLSGCGITEF PDILRTQRQM RTLDISNNKI KGQVPSWLLL QLEYMHISNN NFIGFERSTK LEKTVVPKPS MKHFFGSNNN FSGKIPSFIC
501: SLRSLIILDL SNNNFSGAIP PCVGKFKSTL SDLNLRRNRL SGSLPKTIIK SLRSLDVSHN ELEGKLPRSL IHFSTLEVLN VESNRINDTF PFWLSSLKKL
601: QVLVLRSNAF HGRIHKTRFP KLRIIDISRN HFNGTLPSDC FVEWTGMHSL EKNEDRFNEK YMGSGYYHDS MVLMNKGLEM ELVRILKIYT ALDFSGNKFE
701: GEIPRSIGLL KELHILNLSS NGFTGHIPSS MGNLRELESL DVSRNKLSGE IPQELGNLSY LAYMNFSHNQ LVGQVPGGTQ FRTQSASSFE ENLGLCGRPL
801: EECRVVHEPT PSGESETLES EQVLSWIAAA IGFTPGIVLG LTIGHIVLSS KPRWFFKVLY INNSRRRRRT RSEKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)