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AT3G05625.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 330 Blast hits to 328 proteins in 146 species: Archae - 14; Bacteria - 241; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIGZeggNOG:ENOG4111H5MEMBL:BT002435EMBL:BT006291EMBL:CP002686EnsemblPlants:AT3G05625EnsemblPlants:AT3G05625.1
entrez:819729Gene3D:1.25.40.10GeneID:819729GO:GO:0009507GO:GO:0009570Gramene:AT3G05625.1HOGENOM:HOG000030826
IntAct:Q8GUK5InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT3G05625OMA:NMFKDGGPfam:PF13414
Pfscan:PS50005Pfscan:PS50293PhylomeDB:Q8GUK5PROSITE:PS50005PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_683531.2
SMR:Q8GUK5STRING:3702.AT3G05625.1SUPFAM:SSF48452TAIR:AT3G05625UniGene:At.46014UniProt:Q8GUK5
Coordinates (TAIR10) chr3:+:1632408..1633912
Molecular Weight (calculated) 28954.20 Da
IEP (calculated) 7.45
GRAVY (calculated) -0.36
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLTQIVNPI IYPSRTIPRR FTAISPFKTL SPQFSRHPPH ALSRRLFLPS VSSIWDAITG GGDSNPREAI AAVRRGMQLF RQGDVAGSVA EFDRAIILDP
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKLVND FSSGQASEYF
201: YASLYAGLYY EAEGKSENAK FHLTAACGSP YGQRSDDYMA SLAKVHCLCR NWSSGIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)