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AT3G05480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cell cycle checkpoint control protein family
Curator
Summary (TAIR10)
Involved in the regulation of DNA damage repair and homologous recombination.
Computational
Description (TAIR10)
RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552); Has 299 Blast hits to 299 proteins in 108 species: Archae - 0; Bacteria - 0; Metazoa - 174; Fungi - 56; Plants - 50; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XYYNeggNOG:KOG2810EMBL:BT029213EMBL:CP002686EnsemblPlants:AT3G05480EnsemblPlants:AT3G05480.1entrez:819713
ExpressionAtlas:Q058K5GeneID:819713GO:GO:0000077GO:GO:0006281GO:GO:0030896Gramene:AT3G05480.1hmmpanther:PTHR15237
hmmpanther:PTHR15237:SF0HOGENOM:HOG000030458InterPro:IPR007268InterPro:IPR026584PANTHER:PTHR15237Pfam:PF04139PhylomeDB:Q058K5
PIRSF:PIRSF009303Proteomes:UP000006548RefSeq:NP_187199.2SMR:Q058K5STRING:3702.AT3G05480.3SUPFAM:SSF55979TAIR:AT3G05480
tair10-symbols:ATRAD9tair10-symbols:RAD9UniGene:At.40663UniProt:Q058K5
Coordinates (TAIR10) chr3:+:1585383..1588238
Molecular Weight (calculated) 48023.90 Da
IEP (calculated) 4.85
GRAVY (calculated) -0.43
Length 439 amino acids
Sequence (TAIR10)
(BLAST)
001: MELSISGNAL KTLSRSIICL ARVGNELVVQ ASPTQLALHT LNASRSAYQC ITFQSSFFDV YTVSGPQAHF SVLLKAVCSV LRTPLASIDH MSVQLPDHDA
101: SKVKWTLQCY SGMKKTYWIT CNVEPDIQHL SLDRGRFPST LVMHPRNLSK LLGNFQSSLQ EITIIATDQT SFPSDAASEI GGKAVEFRSY VDPTKDGDSL
201: LHTQLWIDPS EEFLQYTHAG DPVDITFSLK ELKAFLAFCE GCEADIHLFF EKAGEPILMA PKFGLGDGSS SSFDATLVLA TMLVSQLQEG IPAEPPEAAN
301: STGGHAAEQV GSRPQERSRQ NASEHPSDHT RVWSELSGTA TKSVNGTEDR PQAQGQPDLD IHRIRNMEIS KGGPVGDTAP AAPPKSQRPT QIDHAEGSRV
401: RVQNQSFSQH HPSNWVDANE EEEDDDEGVE ATPPHNEDY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)