AT3G05460.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||
| Description (TAIR10) | protein_coding : sporozoite surface protein-related | ||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||
| Computational Description (TAIR10) |
sporozoite surface protein-related; LOCATED IN: endomembrane system; EXPRESSED IN: central cell, embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; Has 195 Blast hits to 96 proteins in 38 species: Archae - 0; Bacteria - 60; Metazoa - 85; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:1577842..1578618 | ||||||||||||||||||||
| Molecular Weight (calculated) | 16800.10 Da | ||||||||||||||||||||
| IEP (calculated) | 8.01 | ||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||
| Length | 152 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKNVSFQLLF LVSLLVLVFG HDLVKGRTMD TNGGGVHTNR GSGFFHDNPP CNPRDPKCID KPCNPENPNC RMEQGAIKPN RGSGYLHDDP PCNPRDPKCI 101: VKPCNPENPN CRMEQGAIKP NRGSGYLHDD PPCNPRDPKC IVKPCNPENP NC |
||||||||||||||||||||
| See Also |
|
||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)