suba logo
AT3G05410.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.550
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Photosystem II reaction center PsbP family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Photosystem II reaction center PsbP family protein; Has 43 Blast hits to 43 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ61eggNOG:ENOG4111T2IEMBL:AC009606EMBL:BT015929EMBL:BT020565EMBL:BX825930EMBL:CP002686
EnsemblPlants:AT3G05410EnsemblPlants:AT3G05410.1EnsemblPlants:AT3G05410.2entrez:819705ExpressionAtlas:F4J7A7Gene3D:3.40.1000.10GeneID:819705
Genevisible:F4J7A7GO:GO:0005509GO:GO:0009507GO:GO:0009654GO:GO:0015979GO:GO:0019898hmmpanther:PTHR31407
hmmpanther:PTHR31407:SF16HOGENOM:HOG000238640InParanoid:F4J7A7InterPro:IPR002683InterPro:IPR016123KEGG:ath:AT3G05410OMA:PSSWVGD
PaxDb:F4J7A7Pfam:PF01789PRIDE:F4J7A7PRO:PR:F4J7A7ProteinModelPortal:F4J7A7Proteomes:UP000006548RefSeq:NP_001154592.1
RefSeq:NP_187192.1SMR:F4J7A7STRING:3702.AT3G05410.2SUPFAM:SSF55724TAIR:AT3G05410UniGene:At.40675UniProt:Q9MA54
Coordinates (TAIR10) chr3:+:1554783..1555399
Molecular Weight (calculated) 19089.80 Da
IEP (calculated) 8.42
GRAVY (calculated) -0.03
Length 177 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLKPYFSLL YSSPTNVKLS NFLIAQQPSG DLKTTPAEEF SPLVEKFNRR LLLGVGSSSV LAIGANFGGT TSFILGLSPG IGRNLKLDVI YPIGGYSRCI
101: DTVEGFEFIY PATWVGDQTL LYRAAEKSER ENSLDLPPAR NSRRKNVNEP VVAFGPPGST GELNVSVIVS PVSPSFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)