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AT3G05400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.870
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G27350.1); Has 24275 Blast hits to 23828 proteins in 1815 species: Archae - 445; Bacteria - 9241; Metazoa - 4940; Fungi - 6177; Plants - 2315; Viruses - 0; Other Eukaryotes - 1157 (source: NCBI BLink).
Protein Annotations
BioGrid:5039eggNOG:ENOG410XNQKeggNOG:KOG0254EMBL:AC009606EMBL:AJ249971EMBL:AY063856EMBL:AY091216
EMBL:CP002686EnsemblPlants:AT3G05400EnsemblPlants:AT3G05400.1entrez:819704ExpressionAtlas:Q8VZT3GeneID:819704Genevisible:Q8VZT3
GO:GO:0008643GO:GO:0016021GO:GO:0022891hmmpanther:PTHR23500hmmpanther:PTHR23500:SF62HOGENOM:HOG000202868InParanoid:Q8VZT3
InterPro:IPR003663InterPro:IPR005828InterPro:IPR005829InterPro:IPR020846OMA:ACEIKISPaxDb:Q8VZT3Pfam:PF00083
Pfam:Q8VZT3Pfscan:PS50850PhylomeDB:Q8VZT3PRIDE:Q8VZT3PRINTS:PR00171PRO:PR:Q8VZT3PROSITE:PS00216
PROSITE:PS00217PROSITE:PS50850ProteinModelPortal:Q8VZT3Proteomes:UP000006548Reactome:R-ATH-428790RefSeq:NP_187191.2scanprosite:PS00216
scanprosite:PS00217SMR:Q8VZT3STRING:3702.AT3G05400.1SUPFAM:SSF103473TAIR:AT3G05400TIGRfam:TIGR00879TIGRFAMs:TIGR00879
TMHMM:TMhelixUniGene:At.701UniProt:Q8VZT3
Coordinates (TAIR10) chr3:+:1549702..1553942
Molecular Weight (calculated) 50605.20 Da
IEP (calculated) 8.60
GRAVY (calculated) 0.69
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGENNMEKG LLLAKKEDSA NTTPLLIFST FIIVSASFTF GAAIGYTADT MSSIMSDLDL SLAQFSLFGS LSTFGGMIGA IFSAKAASAF GHKMTLWVAD
101: LFCITGWLAI SLAKDIIWLD MGRFLVGIGV GLISYVVPVY IAEITPKHVR GAFTFSNQLL QNCGVAVVYY FGNFLSWRTL AIIGSIPCWI QVIGLFFIPE
201: SPRWLAKKGR DKECEEVLQK LRGRKYDIVP EACEIKISVE ASKKNSNINI RSLFEKRYAH QLTIGIGLML LQQLCGTAGI SSYGSTLFKL AGFPARIGMM
301: VLSLIVVPKS LMGLILVDRW GRRPLLMTSA LGLCLSCITL AVAFGVKDVP GIGKITPIFC FIGILSFTMM FAIGMGALPW IIMSEIFPMD IKVLAGSLVT
401: IANWFTGWIA NYAFNFMLVW SPSGTFIISA IICGATIVFT WCLVPETRRL TLEEIQLSFV NV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)