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AT3G05380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : DIRP ;Myb-like DNA-binding domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ALWAYS EARLY 2 (ALY2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Tudor domain (InterPro:IPR002999), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP ;Myb-like DNA-binding domain (TAIR:AT5G27610.1); Has 3515 Blast hits to 2611 proteins in 325 species: Archae - 0; Bacteria - 509; Metazoa - 1706; Fungi - 322; Plants - 232; Viruses - 9; Other Eukaryotes - 737 (source: NCBI BLink).
Protein Annotations
BioGrid:5037eggNOG:ENOG410YA1TeggNOG:KOG1019EMBL:AC009177EMBL:AC009606EMBL:AJ583496EMBL:AY080604
EMBL:CP002686EnsemblPlants:AT3G05380EnsemblPlants:AT3G05380.1entrez:819702GeneID:819702GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0007049GO:GO:0017053hmmpanther:PTHR21689hmmpanther:PTHR21689:SF3HOGENOM:HOG000029798InParanoid:Q6A333
IntAct:Q6A333InterPro:IPR002999InterPro:IPR009057InterPro:IPR010561InterPro:IPR033471iPTMnet:Q6A333KEGG:ath:AT3G05380
ncoils:CoilOMA:GEMEAPRPANTHER:PTHR21689PaxDb:Q6A333Pfam:PF06584Pfam:Q6A333PhylomeDB:Q6A333
PRIDE:Q6A333PRO:PR:Q6A333ProteinModelPortal:Q6A333Proteomes:UP000006548RefSeq:NP_001030643.1RefSeq:NP_001118580.1RefSeq:NP_001189812.1
RefSeq:NP_001189813.1RefSeq:NP_187189.2SMART:SM00333SMART:SM01135STRING:3702.AT3G05380.2SUPFAM:SSF46689TAIR:AT3G05380
tair10-symbols:ALY2tair10-symbols:ATALY2UniGene:At.43378UniGene:At.50756UniProt:Q6A333
Coordinates (TAIR10) chr3:+:1540562..1546139
Molecular Weight (calculated) 117787.00 Da
IEP (calculated) 9.93
GRAVY (calculated) -0.85
Length 1051 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAPVRKSRSV NKRFTNETSP RKDAGKSKKN KLRKKLSDKL GPQWTRLELE RFYDAYRKHG QEWRRVAAAI RNSRSVDMVE ALFNMNRAYL SLPEGTASVA
0101: GLIAMMTDHY SVMEGSGSEG EGHDASEVPR KQQKRKRAKP QRSDSPEEVD IQQSIGSPDG CLTFLKQARA NGTQRHATGK RTPRVPVQTS FMRDDREGST
0201: PPNKRARKQF DANDDVAHFL ALALTDASRR GGSPKVSESP NRRTELSDSS PIKSWGKMSR TRKSQSKHCG SSIFEEWMES SRERKLDSDK DTTLLMDMER
0301: AGEMEAPRKG KRVYKKRVKV EEAECNDSDD NGEACSATQG LRSKSQRRKA AIEASREKYS PRSPKKRDDK HTSGAFDALQ ALAELSASML PANLMESELS
0401: AQLKEERTEY DMDEKSSTPE ATSTSSHGEK ANVEPDDSLL HAISSVENAN KRKSKPSRLV STDCDDVPTG KLQPQTSGSL RKRKPKVLGD EAPAEFSQNK
0501: SINKKELPQD ENNMKSLVKT KRAGQVPAQS KQMKTVKALE ESAITSDKKR PGMDIVASPK QVSDSGPTSL SQKPPNRRKK SLQKSLQEKA KSSETTHKAA
0601: RSSRSLSEQE LLLKDKLATS LSFPFARRRC IFEWFYSAID HPWFSKMEFV DYLNHVGLGH IPRLTRLEWS VIKSSLGRPR RFSERFLHEE REKLKQYRES
0701: VRKHYTELRT GAREGLPTDL ARPLAVGNRV IAIHPKTREI HDGKILTVDH NKCNVLFDDL GVELVMDIDC MPLNPLEYMP EGLRRQIDKC LSMKKEAQLS
0801: GNTNLGVSVL FPPCGLENVS FSMNPPLNQG DMIAPILHGK VSSNTSSPRQ TNHSYITTYN KAKEAEIQRA QALQHALDEK EMEPEMLEIV KGSKTRAQAM
0901: VDAAIKAASS VKEGEDVNTM IQEALELVGK NQLLRSSMVK HHEHVNGSIE HHHNPSPSNG SEPVANNDLN SQDGSEKNAQ MPSELITSCV ATWLMIQMCT
1001: ERQYPPADVA QLIDAAVTSL QPRCPQNLPI YREIQTCMGR IKTQIMSLVP T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)