AT3G05350.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Metallopeptidase M24 family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Metallopeptidase M24 family protein; FUNCTIONS IN: hydrolase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Creatinase (InterPro:IPR000587); BEST Arabidopsis thaliana protein match is: aminopeptidase P1 (TAIR:AT4G36760.1); Has 11788 Blast hits to 11217 proteins in 2602 species: Archae - 275; Bacteria - 7526; Metazoa - 334; Fungi - 310; Plants - 154; Viruses - 0; Other Eukaryotes - 3189 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:1527103..1533843 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78713.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.52 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 710 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIPLTLSSPS LNRLVLSTSR YSHSLFLSNF NSLSLIHRKL PYKPLFGARC HASSSSSSSS SFTAKSSKEI RKAQTKVVVD EKLSSIRRLF SEPGVGIDAY 101: IIPSQDAHQS EFIAECYARR AYISGFTGSA GTAVVTKDKA ALWTDGRYFL QAEKQLNSSW ILMRAGNPGV PTASEWIADV LAPGGRVGID PFLFSADAAE 201: ELKEVIAKKN HELVYLYNVN LVDEIWKDSR PKPPSRQIRI HDLKYAGLDV ASKLLSLRNQ IMDAGTSAIV ISMLDEIAWV LNLRGSDVPH SPVMYAYLIV 301: EVDQAQLFVD NSKVTVEVKD HLKNAGIELR PYDSILQGID SLAARGAQLL MDPSTLNVAI ISTYKSACER YSRNFESEAK VKTKFTDSSS GYTANPSGIY 401: MQSPISWAKA IKNDAELKGM KNSHLRDAAA LAHFWAWLEE EVHKNANLTE VDVADRLLEF RSMQDGFMDT SFDTISGSGA NGAIIHYKPE PESCSRVDPQ 501: KLFLLDSGAQ YVDGTTDITR TVHFSEPSAR EKECFTRVLQ GHIALDQAVF PEGTPGFVLD GFARSSLWKI GLDYRHGTGH GVGAALNVHE GPQSISFRYG 601: NMTPLQNGMI VSNEPGYYED HAFGIRIENL LHVRDAETPN RFGGATYLGF EKLTFFPIQT KMVDVSLLSD TEVDWLNSYH AEVWEKVSPL LEGSTTQQWL 701: WNNTRPLAKP |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)