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AT3G05270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF869)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF869); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G21810.1); Has 124843 Blast hits to 65585 proteins in 3211 species: Archae - 1867; Bacteria - 22851; Metazoa - 56517; Fungi - 10971; Plants - 7183; Viruses - 508; Other Eukaryotes - 24946 (source: NCBI BLink).
Protein Annotations
BioGrid:5026eggNOG:ENOG410IHS5eggNOG:ENOG410YAAZEMBL:AC009177
EMBL:CP002686EnsemblPlants:AT3G05270EnsemblPlants:AT3G05270.1EnsemblPlants:AT3G05270.2
entrez:819691GeneID:819691Genevisible:Q9MA92Gramene:AT3G05270.1
Gramene:AT3G05270.2hmmpanther:PTHR31580hmmpanther:PTHR31580:SF5HOGENOM:HOG000243684
InParanoid:Q9MA92InterPro:IPR008587iPTMnet:Q9MA92KEGG:ath:AT3G05270
ncoils:CoilOMA:NLMVPSVPaxDb:Q9MA92Pfam:PF05911
Pfam:Q9MA92PhylomeDB:Q9MA92PRIDE:Q9MA92PRO:PR:Q9MA92
ProteinModelPortal:Q9MA92Proteomes:UP000006548RefSeq:NP_001118579.1RefSeq:NP_187178.2
STRING:3702.AT3G05270.1TAIR:AT3G05270UniGene:At.43094UniProt:Q9MA92
Coordinates (TAIR10) chr3:-:1500803..1502926
Molecular Weight (calculated) 69649.90 Da
IEP (calculated) 5.08
GRAVY (calculated) -0.88
Length 615 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRRSWLWRR KSSEKSPGET ESTGSVSSHS ERFSDDQRSQ SPELNSKPVT REEEATADIK ILTERLSAAL LNVSLKEDLA KQHAKVAEEA VSGWEKAENE
101: AAALKQQLDA STSKVSALED RNSHLDSALK ECVRQLWQGR EEQNQKIEEA INNKCKEWET TKSQLEARIE ELQARQDVTT SSVHEDLYPK LEALEKENSA
201: LKLQLLSKSE EVKIRTIERD LSTQAAESAS KQQLEGIKKL TKLEAECRKL RVMVRRSDNS SDLKSSIDNQ SDYSGRVSFS DNEMQSPSEK IIGKSSMATS
301: VDIGLMDDFL EMEKLAALPH SEPGRKHSES NKELEKSNAH VNQLKHELKT SLRRISELEE KVEMVEVEKL QLEMALNGSK EQIEALQSRL KEIEGKLSEM
401: KKLEAENQEL ELLLGESGKQ MEDLQRQLNK AQVNLSELET RRAEKLELTM CLNGTKKQLE TSQNRLKETE RKLTELQTLL HLTKDAKEAA EDGLKAANGK
501: TEAIESRLKD VEAEAESLIL KIKSLEDVTE KERALSAKHN SKCNELQDEI SKLKQELEHH QETEPAPNHI KGFELKQEKE LAVAASKFAE CQRTIASLGQ
601: RLQSLATFED FLIES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)