AT3G05260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.454 peroxisome 0.340 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: seed; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G54870.1); Has 119218 Blast hits to 119012 proteins in 3566 species: Archae - 965; Bacteria - 78718; Metazoa - 5045; Fungi - 6123; Plants - 2479; Viruses - 7; Other Eukaryotes - 25881 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1497665..1498919 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31453.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 289 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASGFPPQKQ ETQPGIQHVM EPTPEFSSSN YKPSNKLHGK VALVTGGDSG IGKAVCHCYA LEGASVAFTY VKGREDKDAE ETLRLLHEVK TREAKEPIMI 101: ATDLGFEENC KRVVEEVVNS FGRIDVLVNC AAEQHEVSIE DIDEARLERV FRTNIFSQFF LVKYALKHMK EGSSIINTTS VVAYAGNSSL LEYTATKGAI 201: VSFTRGLALQ LAPKGIRVNG VAPGPVWTPL IPASFSEEAI KQFGSETPMK RAAQPVEVAP SYVFLACNHC SSYYTGQILH PNGGLIVNA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)