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AT3G05250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.600
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); Has 547 Blast hits to 545 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 32; Plants - 178; Viruses - 65; Other Eukaryotes - 43 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQZReggNOG:KOG4430EMBL:AK117770EMBL:BT008778EMBL:CP002686EMBL:DQ086839EnsemblPlants:AT3G05250
EnsemblPlants:AT3G05250.1entrez:819689Gene3D:3.30.40.10GeneID:819689GO:GO:0008270Gramene:AT3G05250.1hmmpanther:PTHR22937
HOGENOM:HOG000083472IntAct:Q8GYA2InterPro:IPR001841InterPro:IPR013083InterPro:IPR017907InterPro:IPR018957KEGG:ath:AT3G05250
OMA:CYKCICQPfam:PF00097Pfscan:PS50089PhylomeDB:Q8GYA2PROSITE:PS00518PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_187176.2scanprosite:PS00518SMART:SM00184SMR:Q8GYA2STRING:3702.AT3G05250.1SUPFAM:SSF57850TAIR:AT3G05250
UniGene:At.40705UniProt:Q8GYA2
Coordinates (TAIR10) chr3:+:1495635..1497387
Molecular Weight (calculated) 32221.10 Da
IEP (calculated) 5.15
GRAVY (calculated) -0.45
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAKEIAGGS GSIDDGSDFD PCPICLGQFL RESYLDTCFH KFCFNCIKQW IKVVSSKASK QRSSVTCPLC KTENLSIIHN YDGCSFERHY IDPNIPDGFV
101: LTKEQRYRLQ CYYTESGFLA DVFDVARFWK LQKFLQPNRC LEAWLRRELQ ALMQEEDVDI VLHHLVGVME SFCKRIKQRR KQETRSAETT NQEQFKAVVS
201: EAARPFVMAR TDRFVDELEL FLAAGLNLEA YDAIYKQGLE GNNRREIGAA SEEREEVEEH NVRTRVTPYL FIFEEDSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)