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AT3G05240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : mitochondrial editing factor 19
Curator
Summary (TAIR10)
Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.
Computational
Description (TAIR10)
mitochondrial editing factor 19 (MEF19); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 (TAIR:AT2G22410.1); Has 38600 Blast hits to 13827 proteins in 232 species: Archae - 0; Bacteria - 10; Metazoa - 58; Fungi - 134; Plants - 37910; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink).
Protein Annotations
BioGrid:5023eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC009177EMBL:CP002686EnsemblPlants:AT3G05240EnsemblPlants:AT3G05240.1
entrez:819688Gene3D:1.25.40.10GeneID:819688Genevisible:Q9MA95Gramene:AT3G05240.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF840
HOGENOM:HOG000237569InParanoid:Q9MA95InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT3G05240OMA:ANETIMVPaxDb:Q9MA95
Pfam:PF01535Pfam:PF13041Pfam:Q9MA95Pfscan:PS51375PhylomeDB:Q9MA95PRIDE:Q9MA95PRO:PR:Q9MA95
PROSITE:PS51375ProteinModelPortal:Q9MA95Proteomes:UP000006548RefSeq:NP_187175.2SMR:Q9MA95STRING:3702.AT3G05240.1TAIR:AT3G05240
tair10-symbols:MEF19TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.65066UniProt:Q9MA95
Coordinates (TAIR10) chr3:-:1493684..1495381
Molecular Weight (calculated) 63293.70 Da
IEP (calculated) 6.44
GRAVY (calculated) 0.02
Length 565 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKKHYKPIL SQLENCRSLV ELNQLHGLMI KSSVIRNVIP LSRLIDFCTT CPETMNLSYA RSVFESIDCP SVYIWNSMIR GYSNSPNPDK ALIFYQEMLR
101: KGYSPDYFTF PYVLKACSGL RDIQFGSCVH GFVVKTGFEV NMYVSTCLLH MYMCCGEVNY GLRVFEDIPQ WNVVAWGSLI SGFVNNNRFS DAIEAFREMQ
201: SNGVKANETI MVDLLVACGR CKDIVTGKWF HGFLQGLGFD PYFQSKVGFN VILATSLIDM YAKCGDLRTA RYLFDGMPER TLVSWNSIIT GYSQNGDAEE
301: ALCMFLDMLD LGIAPDKVTF LSVIRASMIQ GCSQLGQSIH AYVSKTGFVK DAAIVCALVN MYAKTGDAES AKKAFEDLEK KDTIAWTVVI IGLASHGHGN
401: EALSIFQRMQ EKGNATPDGI TYLGVLYACS HIGLVEEGQR YFAEMRDLHG LEPTVEHYGC MVDILSRAGR FEEAERLVKT MPVKPNVNIW GALLNGCDIH
501: ENLELTDRIR SMVAEPEELG SGIYVLLSNI YAKAGRWADV KLIRESMKSK RVDKVLGHSS VETMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)