AT3G05240.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : mitochondrial editing factor 19 | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing. | ||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
mitochondrial editing factor 19 (MEF19); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 (TAIR:AT2G22410.1); Has 38600 Blast hits to 13827 proteins in 232 species: Archae - 0; Bacteria - 10; Metazoa - 58; Fungi - 134; Plants - 37910; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:1493684..1495381 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 63293.70 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||||||||||
Length | 565 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MMKKHYKPIL SQLENCRSLV ELNQLHGLMI KSSVIRNVIP LSRLIDFCTT CPETMNLSYA RSVFESIDCP SVYIWNSMIR GYSNSPNPDK ALIFYQEMLR 101: KGYSPDYFTF PYVLKACSGL RDIQFGSCVH GFVVKTGFEV NMYVSTCLLH MYMCCGEVNY GLRVFEDIPQ WNVVAWGSLI SGFVNNNRFS DAIEAFREMQ 201: SNGVKANETI MVDLLVACGR CKDIVTGKWF HGFLQGLGFD PYFQSKVGFN VILATSLIDM YAKCGDLRTA RYLFDGMPER TLVSWNSIIT GYSQNGDAEE 301: ALCMFLDMLD LGIAPDKVTF LSVIRASMIQ GCSQLGQSIH AYVSKTGFVK DAAIVCALVN MYAKTGDAES AKKAFEDLEK KDTIAWTVVI IGLASHGHGN 401: EALSIFQRMQ EKGNATPDGI TYLGVLYACS HIGLVEEGQR YFAEMRDLHG LEPTVEHYGC MVDILSRAGR FEEAERLVKT MPVKPNVNIW GALLNGCDIH 501: ENLELTDRIR SMVAEPEELG SGIYVLLSNI YAKAGRWADV KLIRESMKSK RVDKVLGHSS VETMF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)