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AT3G05220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Heavy metal transport/detoxification superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G19090.3); Has 104094 Blast hits to 37949 proteins in 1893 species: Archae - 136; Bacteria - 23727; Metazoa - 41586; Fungi - 5547; Plants - 9947; Viruses - 1642; Other Eukaryotes - 21509 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41105H1eggNOG:KOG1603EMBL:AK226941EMBL:CP002686
EnsemblPlants:AT3G05220EnsemblPlants:AT3G05220.1entrez:819686ExpressionAtlas:Q0WV37
GeneID:819686GO:GO:0009506GO:GO:0030001GO:GO:0046872
Gramene:AT3G05220.1hmmpanther:PTHR22814hmmpanther:PTHR22814:SF154InterPro:IPR006121
KEGG:ath:AT3G05220OMA:GPKGPNEPfam:PF00403Pfscan:PS50846
PROSITE:PS50846Proteomes:UP000006548RefSeq:NP_187173.2SMR:Q0WV37
STRING:3702.AT3G05220.1SUPFAM:SSF55008TAIR:AT3G05220UniGene:At.40712
UniProt:Q0WV37
Coordinates (TAIR10) chr3:+:1488808..1491171
Molecular Weight (calculated) 58885.90 Da
IEP (calculated) 9.05
GRAVY (calculated) -1.01
Length 577 amino acids
Sequence (TAIR10)
(BLAST)
001: MNKQDVMKLQ TCVLKVNVHC EGCKHKVKKQ LQKIEGVYSV KADVEQGRVT VTGNIDPALL VKKLSKSGKH AEILGGGGGG GGGGGKGFPN LNGQFANLNM
101: GGNNKPKGGK ESNQVKGKAG GGGGGGQNHG HGQPMQLNPQ QIQQMMMMKA AHGGGGGGQM KMPPMAAKDQ KKSVKFADDE DDEFSEDDYD DEDFSEDDYD
201: DDEFDDDEDD DDEMGHGHGH GGGGGNHMPP NKMMMPNKMM PQMGGHHGNG GGPKGPNEIM MMMNGFKGGG GGGKKGGGGG FEIPVQMKGM GEGKNGKDGK
301: KGKGGEKGKK EGKENKGGGK TGKTDAKSGG GGLLGFFKKG KSGNGDEKKS AGKKDGHGGN KVKSHGGGGG VQHYDSGPKK GGGGTKGGGH GGLDIDELMK
401: HSKGGGGGGN KGNHNHSAKG IGGGPMGPGG PMGPGGPMGQ GGPMGMMGPG GPMSMMGPGG PMGPMGGQGG SYPAVQGLPM SGGGGYYPGP PQASQQMNQQ
501: QYMQMMMNQQ QQQQQQQQAV AHGGYGGGHG GDMYHPMMYA RPYPAVNYAH PPPMPPPHSD SYTHMFSDEN PGSCSIM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)