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AT3G05200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:17317660 (2007): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6).
Computational
Description (TAIR10)
ATL6; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: carbon/nitrogen insensitive 1 (TAIR:AT5G27420.1); Has 9947 Blast hits to 9919 proteins in 286 species: Archae - 0; Bacteria - 0; Metazoa - 2610; Fungi - 790; Plants - 5036; Viruses - 50; Other Eukaryotes - 1461 (source: NCBI BLink).
Protein Annotations
BioGrid:5019EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC009177EMBL:AF132016EMBL:AY080617
EMBL:CP002686EMBL:DQ086860EnsemblPlants:AT3G05200EnsemblPlants:AT3G05200.1entrez:819684Gene3D:3.30.40.10GeneID:819684
Genevisible:Q8RXX9GO:GO:0004842GO:GO:0005886GO:GO:0008270GO:GO:0009814GO:GO:0009816GO:GO:0010200
GO:GO:0016021GO:GO:0016567GO:GO:0016874Gramene:AT3G05200.1hmmpanther:PTHR14155HOGENOM:HOG000239182InParanoid:Q8RXX9
InterPro:IPR001841InterPro:IPR013083iPTMnet:Q8RXX9KEGG:ath:AT3G05200KO:K10664OMA:RNASFLWPaxDb:Q8RXX9
Pfam:PF13639Pfam:Q8RXX9Pfscan:PS50089PhylomeDB:Q8RXX9PRIDE:Q8RXX9PRO:PR:Q8RXX9PROSITE:PS50089
ProteinModelPortal:Q8RXX9Proteomes:UP000006548RefSeq:NP_566249.1SMART:SM00184SMR:Q8RXX9STRING:3702.AT3G05200.1SUPFAM:SSF57850
TAIR:AT3G05200tair10-symbols:ATL6TMHMM:TMhelixUniGene:At.22987UniPathway:UPA00143UniProt:Q8RXX9
Coordinates (TAIR10) chr3:+:1477377..1478573
Molecular Weight (calculated) 43276.60 Da
IEP (calculated) 8.95
GRAVY (calculated) -0.20
Length 398 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSSDHMAFA GVLPIVFLLI LSSADLAASQ SQPGPTNQPY NYGRLSPAMA VIVVILIAAL FFMGFFSIYF RHCSGVPDAG VSPAGGARSR ATVNAAARGL
101: DVSVVETFPT FLYSDVKTQK LGKGELECAI CLNEFEDDET LRLLPKCDHV FHPHCIDAWL EAHVTCPVCR ANLAEQVAEG ESVEPGGTEP DLELQQVVVN
201: PEPVVTAPVP EQLVTSEVDS RRLPGVPVDL KRVKFSRSHT TGHSVVQPGE CTERFTLRLP EDVRKRIMKD WKLNRTNSLL VLPRGGSSRR GKPIDRSRAR
301: SDRWLFRKTP SFLWRSRDDG SIRLGATGSV RASAVPNSTG SDSVRAGDRW AFLRNASFLW RNSSVHVPRG GVNKDGEGTS VKSTGASGST SGSVRLPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)