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AT3G05070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111R31eggNOG:KOG3407EMBL:AC009177EMBL:AK227435EMBL:AY085290EMBL:BT004757EMBL:CP002686
EnsemblPlants:AT3G05070EnsemblPlants:AT3G05070.1entrez:819669GeneID:819669Gramene:AT3G05070.1hmmpanther:PTHR31551HOGENOM:HOG000005890
InterPro:IPR013169KEGG:ath:AT3G05070KO:K12871ncoils:CoilOMA:ELPAMKFPfam:PF08315PhylomeDB:Q9MAB2
Proteomes:UP000006548RefSeq:NP_566245.1STRING:3702.AT3G05070.1TAIR:AT3G05070UniGene:At.40734UniProt:Q9MAB2
Coordinates (TAIR10) chr3:+:1416480..1417533
Molecular Weight (calculated) 16397.30 Da
IEP (calculated) 4.58
GRAVY (calculated) -1.12
Length 144 amino acids
Sequence (TAIR10)
(BLAST)
001: MASEDESIEQ KAAARKEALK ALRAAQELSE TKEDGEDEAV EEDGPAMKFR NYVPQAKELQ DGKLAPPELP KFEDPIVALP PAVEKKEDPF VNIAPKKPNW
101: DLRRDVQKKL DKLERRTQKA MHKLMEEQEK EREMAEADGN TIES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)