AT3G05040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.536 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes member of importin/exportin family. Involved in timing of shoot maturation. Involved in miRNA transport. Mutants flower early and have small, curled leaves and reduced abundance of certain miRNA species. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
HASTY (HST); CONTAINS InterPro DOMAIN/s: Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); Has 520 Blast hits to 417 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 205; Fungi - 183; Plants - 102; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1401479..1408095 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 133136.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.00 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1202 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEDSNSTASN VARAILAVVD FSSTSDTRKS AVQFLDSVKS GDVRVLAKTS FHLVKKEWSS EIRLHAFKML QHLVRLRWDE LSPPECRGLV NLSIELMSEV 0101: ANASENWPLK SQSAALVAEI VRREGPDRWQ EIFTLLTSLS AQGPLQAELV LMTLRWLPED ITIYNDDLEG DRRRLLLRGL TQSLPEILPL LYNLLERHFG 0201: AAMSEAGMQH FDLAKQHADV VIACLNAIVA YTEWAPVPDL ARYGILSGCS FLLSSSDFRL HACEVFKLVC SRKRPSDAST AEFDSAISNL FQILTNASRE 0301: FLCRSSSSSS VIDDNDYDFA VCMCESMASL GSTNLQSISS DGGVMAVYLQ QMLGFFQHFK LGLHFEALLF WLSLMRDLLP KPKAATYPSG GGSSTGGDDS 0401: SSQVDSEKKK TLSLINDDIS SAILDVSFQR MLKKEKVPTG IALSLGPLEL WSDEFEGKGD FGPYRSKLLE LIKLTASHKP LISSTKISER VITLIKHLLA 0501: SPAPLQHVAV MDSQQLALDC IVATLFDGSN EFAGGSSEVH YALRGIFEGL LQQLLSLKWN EPELMKVHVH YLDAMGPFLK YFPDAVGSLI NKLFELLTSL 0601: PHVVKDPATS TSRAARLQIC TSFIRIAKAA EKSVLPHMKG IADTMGYLAK EGTLLRGEHN ILGEAFLVMA SSAGAQQQQE VLAWLLEPLS QQWIQPEWQN 0701: NYLSDPMGLV RLCSNTSFMW SIYHTVTFFE KALKRSGYRK SNLNTTSATT PASHPMAHHL SWMLPPLLKL LRVLHSLWSP SVFQTLPPEM RAAMTMTDAE 0801: RYSLLGEANP KLSKGVSVYA DGSFEGTKEG QAEASESDIR NWLKGIRDCG YNVLGLSTTI GETFFKCLDA NYVAMALMEN LQSMEFRHIR LFIHTFITYI 0901: VKSCPADMWE SWLGVLLHPL FIHCQQALSS AWPGLLQEGR AKVPDLFGIQ SGSDMKLEVM EEKLLRDLTR EIATLFSTMA SPGLNTGVPV LEHSGHVGRV 1001: DMSTLTDLHA FRSNSMVGFL LNHKSVALPA LQICLETFTW TDGEATTKVC YFCGVVVLLA KLTNNVELRE FVSKDMFSAV IRGLGMESNA INSPDLVNIC 1101: REIFIYLSDR DPAPRQVLLS LPCLTPNDLH AFEEATAKTS SPKEQKQLMR SLLLLGTGNN LKALAAQKSQ NVITNVTART RLPASAPETI GAGVLWDEEF 1201: VQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)