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AT3G05030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:12047628 (2002): plant-type vacuole plant-type vacuole membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sodium hydrogen exchanger 2
Curator
Summary (TAIR10)
member of Sodium proton exchanger family
Computational
Description (TAIR10)
sodium hydrogen exchanger 2 (NHX2); FUNCTIONS IN: sodium:hydrogen antiporter activity, sodium ion transmembrane transporter activity; INVOLVED IN: cation transport, sodium ion transport, regulation of pH, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Na+/H+ exchanger, isoforms 1-4, conserved region (InterPro:IPR018407); BEST Arabidopsis thaliana protein match is: Na+/H+ exchanger 1 (TAIR:AT5G27150.1); Has 5612 Blast hits to 5606 proteins in 1611 species: Archae - 51; Bacteria - 3727; Metazoa - 852; Fungi - 131; Plants - 439; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0025eggNOG:KOG1965EMBL:AC009465EMBL:AF490586EMBL:AK221629EMBL:CP002686EnsemblPlants:AT3G05030
EnsemblPlants:AT3G05030.1entrez:819665GeneID:819665Genevisible:Q56XP4GO:GO:0005774GO:GO:0005886GO:GO:0006885
GO:GO:0009651GO:GO:0010107GO:GO:0015385GO:GO:0015386GO:GO:0016021GO:GO:0035725GO:GO:0055075
GO:GO:0090333hmmpanther:PTHR10110hmmpanther:PTHR10110:SF117HOGENOM:HOG000272718InParanoid:Q56XP4InterPro:IPR004709InterPro:IPR006153
InterPro:IPR018422InterPro:IPR029872iPTMnet:Q56XP4KEGG:ath:AT3G05030OMA:FVTIMAFPANTHER:PTHR10110PANTHER:PTHR10110:SF117
PaxDb:Q56XP4Pfam:PF00999Pfam:Q56XP4PhylomeDB:Q56XP4PRIDE:Q56XP4PRINTS:PR01084PRO:PR:Q56XP4
ProteinModelPortal:Q56XP4Proteomes:UP000006548RefSeq:NP_001078110.1RefSeq:NP_187154.1SMR:Q56XP4STRING:3702.AT3G05030.1TAIR:AT3G05030
tair10-symbols:ATNHX2tair10-symbols:NHX2TIGRfam:TIGR00840TIGRFAMs:TIGR00840TMHMM:TMhelixUniGene:At.40740UniProt:Q56XP4
Coordinates (TAIR10) chr3:-:1393456..1396784
Molecular Weight (calculated) 60526.30 Da
IEP (calculated) 8.16
GRAVY (calculated) 0.47
Length 546 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMFASLTSK MLSVSTSDHA SVVSLNLFVA LLCACIVIGH LLEENRWMNE SITALLIGLG TGVVILLISR GKNSHLLVFS EDLFFIYLLP PIIFNAGFQV
101: KKKQFFRNFV TIMAFGAIGT VVSCTIISLG AIQFFKKLDI GTFDLGDFLA IGAIFAATDS VCTLQVLNQD ETPLLYSLVF GEGVVNDATS VVLFNAIQSF
201: DLTHLNHEAA FQFLGNFFYL FLLSTGLGVA TGLISAYVIK KLYFGRHSTD REVALMMLMA YLSYMLAELF ALSGILTVFF CGIVMSHYTW HNVTESSRIT
301: TKHAFATLSF LAETFIFLYV GMDALDIEKW RFVSDSPGTS VAVSSILMGL VMLGRAAFVF PLSFLSNLAK KHQSEKISIK QQVVIWWAGL MRGAVSMALA
401: YNKFTRSGHT ELRGNAIMIT STITVCLFST MVFGMLTKPL IRYLMPHQKA TTSTTSMLSD DSTPKSIHIP LLDGEQLDSF ELPGSHQDVP RPNSLRGFLM
501: RPTRTVHYYW RQFDDAFMRP VFGGRGFVPF VPGSPTERSS HDLSKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)