suba logo
AT3G05020.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : acyl carrier protein 1
Curator
Summary (TAIR10)
encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Protein is not regulated by light.
Computational
Description (TAIR10)
acyl carrier protein 1 (ACP1); FUNCTIONS IN: acyl carrier activity; INVOLVED IN: fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Acyl carrier protein-like (InterPro:IPR009081), Acyl carrier protein (ACP) (InterPro:IPR003231), Phosphopantetheine attachment site (InterPro:IPR006162); BEST Arabidopsis thaliana protein match is: acyl carrier protein 5 (TAIR:AT5G27200.1); Has 7070 Blast hits to 7070 proteins in 2342 species: Archae - 0; Bacteria - 4637; Metazoa - 167; Fungi - 132; Plants - 369; Viruses - 2; Other Eukaryotes - 1763 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0236eggNOG:KOG1748EMBL:AC009465EMBL:AY085288EMBL:BT006397EMBL:CP002686EMBL:X13708
EnsemblPlants:AT3G05020EnsemblPlants:AT3G05020.1entrez:819664ExpressionAtlas:P11829Gene3D:1.10.1200.10GeneID:819664Genevisible:P11829
GO:GO:0000036GO:GO:0005829GO:GO:0006633GO:GO:0009507Gramene:AT3G05020.1HAMAP:MF_01217hmmpanther:PTHR20863
hmmpanther:PTHR20863:SF29HOGENOM:HOG000178184InParanoid:P11829InterPro:IPR003231InterPro:IPR006162InterPro:IPR009081KEGG:ath:AT3G05020
ncoils:CoilOMA:SCSAKQDPaxDb:P11829Pfam:P11829Pfam:PF00550Pfscan:PS50075PhylomeDB:P11829
PIR:S03267PRIDE:P11829PRO:PR:P11829ProDom:PD000887PROSITE:PS00012PROSITE:PS50075ProteinModelPortal:P11829
Proteomes:UP000006548RefSeq:NP_187153.1scanprosite:PS00012SMR:P11829STRING:3702.AT3G05020.1SUPFAM:SSF47336TAIR:AT3G05020
tair10-symbols:ACPtair10-symbols:ACP1TIGRfam:TIGR00517TIGRFAMs:TIGR00517UniGene:At.40742UniGene:At.60289UniProt:P11829
UniProt:Q0WT41
Coordinates (TAIR10) chr3:-:1391863..1392878
Molecular Weight (calculated) 15056.20 Da
IEP (calculated) 7.27
GRAVY (calculated) -0.18
Length 137 amino acids
Sequence (TAIR10)
(BLAST)
001: MATQFSASVS LQTSCLATTR ISFQKPALIS NHGKTNLSFN LRRSIPSRRL SVSCAAKQET IEKVSAIVKK QLSLTPDKKV VAETKFADLG ADSLDTVEIV
101: MGLEEEFNIQ MAEEKAQKIA TVEQAAELIE ELINEKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)