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AT3G05010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.930
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function, transmembrane-40
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, transmembrane-40; CONTAINS InterPro DOMAIN/s: Protein of unknown function, transmembrane-40 (InterPro:IPR018781); BEST Arabidopsis thaliana protein match is: Protein of unknown function, transmembrane-40 (TAIR:AT5G27210.1); Has 134 Blast hits to 134 proteins in 47 species: Archae - 0; Bacteria - 6; Metazoa - 78; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRXYeggNOG:KOG4536EMBL:AY046040EMBL:CP002686EnsemblPlants:AT3G05010EnsemblPlants:AT3G05010.1entrez:819662
GeneID:819662GO:GO:0002237GO:GO:0010015GO:GO:0016021Gramene:AT3G05010.1hmmpanther:PTHR15876HOGENOM:HOG000240424
IntAct:Q94AH1InterPro:IPR018781KEGG:ath:AT3G05010OMA:CLQAWECPANTHER:PTHR15876Pfam:PF10160PhylomeDB:Q94AH1
Proteomes:UP000006548RefSeq:NP_566244.1STRING:3702.AT3G05010.1TAIR:AT3G05010TMHMM:TMhelixUniGene:At.40742UniGene:At.60289
UniProt:Q94AH1
Coordinates (TAIR10) chr3:+:1389603..1391462
Molecular Weight (calculated) 34064.80 Da
IEP (calculated) 6.86
GRAVY (calculated) 0.56
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MRVLSEIAES PFVISRLSPD STATGGFIGG WVGKCHGFLH NTVLVLASIL FVAYLAYEAK KSLSKLSNRR SYIMIAYYGF LWLVSLLNLA WCCLQAWECT
101: PGKEVIWNLL TLFTTSGMLF LEVSLVAFLF QGNYASGAEA LTRTFLISGL VIGLDLLLKA IYLFGFGVPL FIDNNEHIHK FKWGLWVIHK LLLAGIYGMI
201: FFMYNSKWRE RLPARPAFYK YITVMLALNG LSLFACALTA NGAHFGLWLY GITSVCYHAF YLPLLYVTFL ADFFQEEDLN LENVYYSEMK DAGFFDADWE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)