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AT3G04920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S24e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S24e family protein; FUNCTIONS IN: structural constituent of ribosome, nucleotide binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S24e (InterPro:IPR001976), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal S24e conserved site (InterPro:IPR018098); BEST Arabidopsis thaliana protein match is: Ribosomal protein S24e family protein (TAIR:AT5G28060.1); Has 888 Blast hits to 888 proteins in 327 species: Archae - 80; Bacteria - 0; Metazoa - 406; Fungi - 151; Plants - 124; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Protein Annotations
BioGrid:4987eggNOG:COG2004eggNOG:KOG3424EMBL:AC009465EMBL:AY050364EMBL:AY062671EMBL:AY086479
EMBL:AY093332EMBL:AY094044EMBL:CP002686EnsemblPlants:AT3G04920EnsemblPlants:AT3G04920.1entrez:819652Gene3D:3.30.70.330
GeneID:819652Genevisible:Q9SS17GO:GO:0000166GO:GO:0003735GO:GO:0005730GO:GO:0005774GO:GO:0005829
GO:GO:0005886GO:GO:0006412GO:GO:0009507GO:GO:0016020GO:GO:0022626GO:GO:0022627Gramene:AT3G04920.1
HAMAP:MF_00545hmmpanther:PTHR10496HOGENOM:HOG000186306InParanoid:Q9SS17IntAct:Q9SS17InterPro:IPR001976InterPro:IPR012677
InterPro:IPR012678InterPro:IPR018098KEGG:ath:AT3G04920KO:K02974OMA:WISFAEMPANTHER:PTHR10496PaxDb:Q9SS17
Pfam:PF01282Pfam:Q9SS17PhylomeDB:Q9SS17PRIDE:Q9SS17PRO:PR:Q9SS17ProDom:PD006052PROSITE:PS00529
ProteinModelPortal:Q9SS17Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702
Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_187143.1scanprosite:PS00529SMR:Q9SS17STRING:3702.AT3G04920.1
SUPFAM:SSF54189TAIR:AT3G04920UniGene:At.19916UniGene:At.20505UniProt:Q9SS17
Coordinates (TAIR10) chr3:+:1360989..1362065
Molecular Weight (calculated) 15373.10 Da
IEP (calculated) 11.42
GRAVY (calculated) -0.81
Length 133 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEKAVTIRT RKFMTNRLLS RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFVF KFRTHFGGGK SSGFGLIYDT VESAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDA KKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)