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AT3G04880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA-damage-repair/toleration protein (DRT102)
Curator
Summary (TAIR10)
encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).
Computational
Description (TAIR10)
DNA-DAMAGE-REPAIR/TOLERATION 2 (DRT102); INVOLVED IN: response to UV, photoreactive repair, response to cold; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribose/galactose isomerase (InterPro:IPR003500), DNA-damage-repair/toleration protein, DRT102 (InterPro:IPR012100), Cupin 2, conserved barrel (InterPro:IPR013096), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); Has 4975 Blast hits to 4975 proteins in 1551 species: Archae - 4; Bacteria - 3564; Metazoa - 0; Fungi - 71; Plants - 32; Viruses - 0; Other Eukaryotes - 1304 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0698eggNOG:ENOG410IGUEEMBL:AC009465EMBL:AY052206EMBL:AY143862EMBL:CP002686EMBL:L11368
EnsemblPlants:AT3G04880EnsemblPlants:AT3G04880.1entrez:819648Gene3D:2.60.120.10Gene3D:3.40.1400.10GeneID:819648Genevisible:Q05212
GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0005975GO:GO:0006281GO:GO:0009409GO:GO:0016853
Gramene:AT3G04880.1hmmpanther:PTHR30345hmmpanther:PTHR30345:SF0HOGENOM:HOG000030799InParanoid:Q05212InterPro:IPR003500InterPro:IPR011051
InterPro:IPR012100InterPro:IPR013096InterPro:IPR014710KEGG:00052+5.3.1.26KEGG:ath:AT3G04880OMA:FEDTEFFPANTHER:PTHR30345
PaxDb:Q05212Pfam:PF02502Pfam:PF07883Pfam:Q05212PhylomeDB:Q05212PIR:S35271PIRSF:PIRSF011609
PRIDE:Q05212PRO:PR:Q05212ProteinModelPortal:Q05212Proteomes:UP000006548RefSeq:NP_566241.1SMR:Q05212STRING:3702.AT3G04880.1
SUPFAM:SSF51182SUPFAM:SSF89623TAIR:AT3G04880tair10-symbols:DRT102UniGene:At.24092UniGene:At.71000unipathway:UPA00702
UniProt:Q05212
Coordinates (TAIR10) chr3:-:1346431..1347363
Molecular Weight (calculated) 33235.10 Da
IEP (calculated) 4.96
GRAVY (calculated) -0.09
Length 310 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGAVSAVDQ PLKIITGADD FGASLKDAMV THLRSLGIDV EDTGVSSYYS AGSEVGRRVS ASSSSEVRGL VCCGTGVGVA MFANKFPGVY AATCLSVEDA
101: VNARSISNCN VLAFSGIKTS PETALEIFDA WIKTPFKSPC PASGSEPWSS VISSFLDNSL SEMSQIGKST AGDSTTKKID ETTASCVICC LAKNREFTPV
201: DIMPGGSMKI VRETPTSAIV RFKAGSVEPA HHHTFGHDLV VIKGKKSVWN LSKKERADLV DGDYLFTPAG DVHRVKYHED TEFFITWDGH WDIFLDEDLE
301: TAKKAIEEEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)