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AT3G04830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.532
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein prenylyltransferase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Protein prenylyltransferase superfamily protein (TAIR:AT5G28220.1); Has 554 Blast hits to 546 proteins in 223 species: Archae - 33; Bacteria - 51; Metazoa - 210; Fungi - 111; Plants - 58; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
Protein Annotations
DNASU:819643eggNOG:ENOG410YT6BeggNOG:KOG3060EMBL:AC009465
EMBL:AY087846EMBL:BT001989EMBL:CP002686EnsemblPlants:AT3G04830
EnsemblPlants:AT3G04830.1entrez:819643ExpressionAtlas:Q9CAU9Gene3D:1.25.40.10
GeneID:819643GO:GO:0005783GO:GO:0005794GO:GO:0016740
Gramene:AT3G04830.1hmmpanther:PTHR12760HOGENOM:HOG000007547InterPro:IPR011990
InterPro:IPR013026OMA:GGVWEYLPfam:PF07719Pfscan:PS50293
PhylomeDB:Q9CAU9PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_850995.1
SMR:Q9CAU9STRING:3702.AT3G04830.1SUPFAM:SSF48452TAIR:AT3G04830
UniGene:At.17645UniProt:Q9CAU9
Coordinates (TAIR10) chr3:+:1326289..1329132
Molecular Weight (calculated) 33747.10 Da
IEP (calculated) 8.33
GRAVY (calculated) -0.17
Length 303 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTKTEEIQL NQLENQVENG GGGVWEYLCL VRKLKVRRSE IVLKHGLSIL NDSGKRSALG PDEWTLYEQV AIAAMDCQSL GVAQNCIKVL KKKFPESKRV
101: GKLEALLLEA KGMWEEAEKA YTSLLEDNPL DQVIHKRKVA MAKAQGKSSL AIEHLNKYLE VFMADHDAWR ELAEIYVSLQ MYKQAAFCYE ELILTQPTLP
201: LYHLAYADVL YTIGGLENLI AARKYYAATI DLTGGKSTRA LLGICLCGSA IAQISKGRNK EDKDMAAPEL QSLAATALER EYKQKAPAKL NLLTSALRNL
301: KIA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)